Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47459 * 2 1 4 4 H 1.08990 * 109.47568 * 177.17738 * 3 2 1 5 5 C 1.50701 * 109.46906 * 57.17560 * 3 2 1 6 6 H 1.08005 * 120.00342 * 246.05805 * 5 3 2 7 7 C 1.37874 * 120.00207 * 66.05791 * 5 3 2 8 8 N 1.31517 * 119.99856 * 356.08711 * 7 5 3 9 9 Si 1.86804 * 120.00475 * 175.80711 * 7 5 3 10 10 H 1.48503 * 109.46980 * 89.99856 * 9 7 5 11 11 H 1.48491 * 109.47447 * 210.00100 * 9 7 5 12 12 H 1.48497 * 109.46982 * 330.00336 * 9 7 5 13 13 N 1.46908 * 109.47016 * 297.18049 * 3 2 1 14 14 C 1.48561 * 110.99810 * 83.07999 * 13 3 2 15 15 C 1.54383 * 104.59102 * 200.96197 * 14 13 3 16 16 H 1.08998 * 117.60453 * 244.71637 * 15 14 13 17 17 C 1.52994 * 118.12748 * 87.23162 * 15 14 13 18 18 C 1.52997 * 60.54524 * 268.33072 * 17 15 14 19 19 N 1.46900 * 119.52501 * 248.26349 * 18 17 15 20 20 C 1.48560 * 110.99633 * 327.66267 * 13 3 2 21 21 H 1.09007 * 109.46708 * 69.22168 * 1 2 3 22 22 H 1.09001 * 109.47248 * 189.21493 * 1 2 3 23 23 H 1.08999 * 109.47337 * 309.22243 * 1 2 3 24 24 H 1.09000 * 109.47378 * 239.99513 * 2 1 3 25 25 H 1.09001 * 109.46753 * 119.99564 * 2 1 3 26 26 H 0.97002 * 119.99891 * 5.05879 * 8 7 5 27 27 H 1.08999 * 110.41235 * 319.73579 * 14 13 3 28 28 H 1.08996 * 110.41289 * 82.06678 * 14 13 3 29 29 H 1.08998 * 117.45174 * 15.97915 * 17 15 14 30 30 H 1.09002 * 117.44506 * 160.68315 * 17 15 14 31 31 H 1.00899 * 110.99987 * 250.69532 * 19 18 17 32 32 H 1.00901 * 111.00417 * 14.64715 * 19 18 17 33 33 H 1.08998 * 110.41290 * 277.81876 * 20 13 3 34 34 H 1.08997 * 110.41225 * 40.26131 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1288 1.4429 0.0506 5 6 1.4814 2.1728 1.1940 6 1 0.7879 2.9885 1.0522 7 6 1.8556 1.7996 2.4674 8 7 2.6391 0.7582 2.6440 9 14 1.2561 2.7779 3.9416 10 1 -0.0301 2.2116 4.4215 11 1 2.2654 2.7043 5.0282 12 1 1.0561 4.1954 3.5468 13 7 1.6069 2.1150 -1.2321 14 6 0.2186 2.6270 -1.0992 15 6 -0.2741 2.7969 -2.5524 16 1 -0.4977 3.8072 -2.8951 17 6 -0.9122 1.5902 -3.2434 18 6 0.5923 1.8296 -3.3850 19 7 1.1443 2.2141 -4.6909 20 6 1.5355 1.1566 -2.3649 21 1 -0.3633 0.3646 -0.9609 22 1 -0.3634 -1.0144 0.1646 23 1 -0.3634 0.6498 0.7961 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.0131 0.2970 1.8769 27 1 -0.4034 1.9060 -0.5688 28 1 0.2150 3.5855 -0.5802 29 1 -1.2318 0.7609 -2.6124 30 1 -1.5360 1.7829 -4.1163 31 1 1.6832 1.4610 -5.0916 32 1 0.4129 2.5097 -5.3199 33 1 2.5236 1.0088 -2.8007 34 1 1.1196 0.2055 -2.0325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246867867.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 37.215534 kcal Electronic energy + Delta-G solvation = -14950.571363 eV Core-core repulsion = 12691.183703 eV Total energy + Delta-G solvation = -2259.387660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.54263 -37.75804 -34.43726 -32.67294 -31.79981 -29.20984 -28.22128 -25.95885 -24.28209 -21.60995 -21.35424 -20.29534 -18.61160 -17.29205 -17.00617 -16.13836 -15.74217 -15.59498 -15.34951 -14.72856 -14.10114 -13.58636 -13.44308 -13.11138 -12.98944 -12.68284 -12.60334 -12.44715 -12.11549 -11.99361 -11.92395 -11.78291 -11.32287 -11.00064 -10.55124 -10.33238 -9.32857 -8.87256 -8.49200 -6.24959 1.53198 1.61815 1.78596 2.56758 2.68824 3.18314 3.26307 3.45036 3.65404 3.73569 4.11870 4.28202 4.28249 4.38202 4.49202 4.62960 4.67381 4.74732 4.84849 4.93016 4.94853 5.04238 5.23465 5.24889 5.34439 5.46188 5.53128 5.76291 6.11873 6.20279 6.39048 6.49895 6.60467 6.75460 7.52336 8.83594 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048471 B = 0.009886 C = 0.009411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.531149 B = 2831.512040 C = 2974.648134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.149 4.149 3 C 0.190 3.810 4 H -0.007 1.007 5 C -0.589 4.589 6 H 0.056 0.944 7 C -0.027 4.027 8 N -0.939 5.939 9 Si 1.111 2.889 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.511 5.511 14 C 0.061 3.939 15 C -0.173 4.173 16 H 0.115 0.885 17 C -0.162 4.162 18 C 0.044 3.956 19 N -0.801 5.801 20 C 0.055 3.945 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.262 0.738 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.354 0.646 32 H 0.355 0.645 33 H 0.069 0.931 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -0.206 -11.548 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C 0.082 3.918 4 H 0.011 0.989 5 C -0.627 4.627 6 H 0.074 0.926 7 C -0.226 4.226 8 N -0.578 5.578 9 Si 0.934 3.066 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.235 5.235 14 C -0.066 4.066 15 C -0.193 4.193 16 H 0.133 0.867 17 C -0.202 4.202 18 C -0.051 4.051 19 N -0.331 5.331 20 C -0.073 4.073 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.087 0.913 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.774 0.853 -9.619 11.796 hybrid contribution -0.559 -1.412 -1.541 2.164 sum -7.333 -0.560 -11.161 13.366 Atomic orbital electron populations 1.21939 0.95407 1.00261 1.01640 1.22172 0.97353 0.99767 0.99509 1.19398 0.93538 0.90406 0.88453 0.98889 1.22320 1.29149 1.18882 0.92377 0.92612 1.26983 0.95437 0.96631 1.03519 1.70881 1.32921 1.19407 1.34592 0.82991 0.76135 0.74793 0.72670 1.20004 1.21346 1.20077 1.65626 1.22551 1.30917 1.04382 1.22755 0.89620 1.00214 0.94021 1.23687 1.05246 0.96400 0.94008 0.86669 1.23829 0.95090 0.98397 1.02933 1.22359 0.89177 1.01579 0.92002 1.58260 1.28897 1.42885 1.03061 1.22799 0.98521 0.95192 0.90823 0.91480 0.93558 0.93170 0.93032 0.93729 0.92654 0.91533 0.92759 0.89169 0.85592 0.83072 0.83069 0.91303 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 7.81 71.98 0.56 -4.93 16 2 C -0.15 -6.80 4.81 30.59 0.15 -6.65 16 3 C 0.19 9.70 2.51 44.17 0.11 9.81 16 4 H -0.01 -0.39 7.83 -2.39 -0.02 -0.41 16 5 C -0.59 -32.33 6.36 25.60 0.16 -32.17 16 6 H 0.06 3.06 5.63 -2.91 -0.02 3.04 16 7 C -0.03 -1.52 5.36 84.65 0.45 -1.07 16 8 N -0.94 -56.38 13.05 21.45 0.28 -56.10 16 9 Si 1.11 50.47 29.91 68.60 2.05 52.52 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.51 -22.71 5.59 -860.73 -4.81 -27.53 16 14 C 0.06 2.47 4.30 86.45 0.37 2.84 16 15 C -0.17 -5.47 7.13 -9.90 -0.07 -5.54 16 16 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 17 C -0.16 -4.00 9.65 30.59 0.30 -3.71 16 18 C 0.04 1.27 3.72 4.42 0.02 1.29 16 19 N -0.80 -19.19 9.93 -148.06 -1.47 -20.66 16 20 C 0.05 1.99 5.18 86.45 0.45 2.44 16 21 H 0.07 2.40 2.80 -2.38 -0.01 2.40 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.05 2.28 6.24 -2.39 -0.01 2.26 16 24 H 0.05 2.13 5.97 -2.39 -0.01 2.11 16 25 H 0.04 2.29 5.72 -2.39 -0.01 2.28 16 26 H 0.26 15.83 5.46 -92.71 -0.51 15.32 16 27 H 0.07 2.74 3.75 -2.39 -0.01 2.73 16 28 H 0.05 2.38 7.02 -2.39 -0.02 2.36 16 29 H 0.09 2.30 6.48 -2.39 -0.02 2.28 16 30 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.35 7.20 9.08 -89.69 -0.81 6.39 16 32 H 0.35 6.55 8.92 -89.69 -0.80 5.75 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.38 3.89 -2.39 -0.01 2.37 16 Total: -1.00 -63.62 247.96 -1.66 -65.29 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.21 Total: 24.17 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 2.50 Total: -37.69 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -6.00 Total: -104.28 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.05 Total: 52.52 kcal Total: -63.62 -1.66 -65.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246867867.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.503 kcal (2) G-P(sol) polarization free energy of solvation -63.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds