Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 H 1.09008 * 109.47489 * 303.39722 * 3 2 1 5 5 C 1.50700 * 109.47449 * 183.39785 * 3 2 1 6 6 H 1.08002 * 120.00055 * 243.10716 * 5 3 2 7 7 C 1.37879 * 119.99713 * 63.10337 * 5 3 2 8 8 N 1.31509 * 120.00093 * 7.05529 * 7 5 3 9 9 Si 1.86801 * 119.99639 * 187.05362 * 7 5 3 10 10 H 1.48501 * 109.47374 * 84.99080 * 9 7 5 11 11 H 1.48504 * 109.46894 * 204.98930 * 9 7 5 12 12 H 1.48495 * 109.47440 * 324.99135 * 9 7 5 13 13 N 1.46901 * 109.47253 * 63.39353 * 3 2 1 14 14 C 1.48569 * 110.99686 * 69.87463 * 13 3 2 15 15 C 1.54375 * 104.59313 * 159.03816 * 14 13 3 16 16 H 1.09003 * 117.60223 * 117.24992 * 15 14 13 17 17 C 1.53006 * 118.12929 * 272.77158 * 15 14 13 18 18 C 1.53001 * 60.54342 * 91.67156 * 17 15 14 19 19 N 1.46897 * 119.52547 * 111.74398 * 18 17 15 20 20 C 1.48562 * 111.00200 * 185.28874 * 13 3 2 21 21 H 1.08998 * 109.47163 * 60.00126 * 1 2 3 22 22 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47022 * 299.99639 * 1 2 3 24 24 H 1.08994 * 109.47007 * 240.00407 * 2 1 3 25 25 H 1.08998 * 109.47163 * 119.99874 * 2 1 3 26 26 H 0.97000 * 119.99860 * 179.97438 * 8 7 5 27 27 H 1.08996 * 110.41225 * 277.81888 * 14 13 3 28 28 H 1.09010 * 110.40897 * 40.26297 * 14 13 3 29 29 H 1.09003 * 117.44039 * 199.31596 * 17 15 14 30 30 H 1.08993 * 117.44507 * 344.06282 * 17 15 14 31 31 H 1.00897 * 111.00409 * 109.30001 * 19 18 17 32 32 H 1.00906 * 110.99595 * 233.25539 * 19 18 17 33 33 H 1.08999 * 110.41322 * 319.74958 * 20 13 3 34 34 H 1.09005 * 110.40799 * 82.18652 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9737 -0.8580 5 6 3.5446 1.4435 -0.0842 6 1 4.1306 1.8503 0.7267 7 6 4.1731 0.9249 -1.1965 8 7 3.4638 0.5573 -2.2410 9 14 6.0323 0.7445 -1.2195 10 1 6.4129 -0.5409 -0.5807 11 1 6.5137 0.7608 -2.6243 12 1 6.6482 1.8701 -0.4721 13 7 1.6184 2.1109 1.2383 14 6 2.3463 1.5646 2.4126 15 6 2.2290 2.6647 3.4892 16 1 1.6959 2.4180 4.4074 17 6 3.2815 3.7752 3.5035 18 6 1.9921 3.9709 2.7036 19 7 1.0116 4.9721 3.1444 20 6 1.9862 3.5502 1.2183 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9060 0.1928 -3.0236 27 1 1.8755 0.6439 2.7570 28 1 3.3924 1.3873 2.1626 29 1 3.3939 4.3489 4.4235 30 1 4.1997 3.6044 2.9416 31 1 0.9896 5.7590 2.5133 32 1 0.0950 4.5617 3.2427 33 1 2.9758 3.6836 0.7813 34 1 1.2441 4.1244 0.6635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246867880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 32.966410 kcal Electronic energy + Delta-G solvation = -14678.183126 eV Core-core repulsion = 12418.611210 eV Total energy + Delta-G solvation = -2259.571916 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.43704 -35.50236 -32.30856 -31.38519 -30.65849 -26.93591 -26.73316 -23.97844 -22.06302 -20.38835 -19.31184 -18.69446 -16.47319 -15.66724 -15.01314 -14.89971 -14.01359 -13.74767 -13.13743 -12.76450 -12.49310 -12.18004 -11.98034 -11.66242 -11.33029 -11.13031 -10.91217 -10.63801 -10.38904 -10.11520 -9.89309 -9.74903 -9.54244 -9.23261 -9.16080 -8.44821 -8.39529 -7.23311 -6.06331 -4.15831 3.24525 3.31686 3.33726 4.03758 4.36262 4.59846 4.97318 5.20392 5.24915 5.41011 5.70887 5.79678 6.07441 6.14864 6.28213 6.39440 6.40917 6.52617 6.56521 6.62158 6.69737 6.86337 7.00517 7.10667 7.23490 7.46309 7.49031 7.62916 7.68273 7.86739 8.06409 8.13607 8.35320 8.93424 9.50490 10.96419 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.011856 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.939837 B = 2361.114470 C = 2928.507298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.201 3.799 4 H 0.042 0.958 5 C -0.548 4.548 6 H 0.061 0.939 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.506 5.506 14 C 0.059 3.941 15 C -0.157 4.157 16 H 0.106 0.894 17 C -0.134 4.134 18 C 0.025 3.975 19 N -0.806 5.806 20 C 0.052 3.948 21 H 0.039 0.961 22 H 0.026 0.974 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.033 0.967 26 H 0.262 0.738 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.342 0.658 32 H 0.342 0.658 33 H 0.061 0.939 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 3.630 7.101 8.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.587 4.587 6 H 0.079 0.921 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.230 5.230 14 C -0.069 4.069 15 C -0.177 4.177 16 H 0.124 0.876 17 C -0.173 4.173 18 C -0.070 4.070 19 N -0.334 5.334 20 C -0.078 4.078 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.925 3.525 7.575 8.853 hybrid contribution 1.425 -0.252 -1.139 1.841 sum -1.501 3.273 6.437 7.375 Atomic orbital electron populations 1.21713 0.98644 0.98537 1.00741 1.21446 0.92456 0.98989 1.01144 1.19394 0.93157 0.91194 0.86820 0.94032 1.21676 0.92546 1.40995 1.03494 0.92149 1.24909 0.97885 0.95198 0.95218 1.69936 1.35388 1.42310 1.04395 0.86729 0.86159 0.78672 0.77191 1.20503 1.21248 1.20035 1.65854 1.51770 1.00738 1.04592 1.22642 0.99555 0.95280 0.89452 1.23651 1.03549 0.90608 0.99879 0.87590 1.23175 0.92788 1.00244 1.01069 1.22488 0.96901 0.95478 0.92088 1.58468 1.10591 1.09820 1.54528 1.22902 1.00647 0.91847 0.92402 0.94177 0.95497 0.93176 0.90389 0.94794 0.92823 0.91371 0.91391 0.88570 0.89183 0.84569 0.84507 0.92099 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.79 37.16 0.36 -2.45 16 2 C -0.10 -2.38 5.25 -26.73 -0.14 -2.52 16 3 C 0.20 4.90 1.66 -68.86 -0.11 4.78 16 4 H 0.04 1.14 8.13 -51.92 -0.42 0.72 16 5 C -0.55 -14.33 6.54 -34.44 -0.23 -14.56 16 6 H 0.06 1.58 5.65 -52.49 -0.30 1.28 16 7 C 0.07 1.91 5.21 -17.82 -0.09 1.82 16 8 N -0.88 -24.66 11.88 55.43 0.66 -24.00 16 9 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.51 -10.63 4.74 -223.39 -1.06 -11.69 16 14 C 0.06 1.15 5.29 -2.18 -0.01 1.14 16 15 C -0.16 -2.66 7.13 -89.24 -0.64 -3.29 16 16 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 17 C -0.13 -2.16 10.05 -26.73 -0.27 -2.43 16 18 C 0.02 0.41 3.62 -130.22 -0.47 -0.06 16 19 N -0.81 -11.39 9.91 1.85 0.02 -11.37 16 20 C 0.05 1.03 6.07 -2.18 -0.01 1.01 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 24 H 0.08 2.03 6.53 -51.93 -0.34 1.69 16 25 H 0.03 0.78 7.11 -51.93 -0.37 0.41 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.07 1.31 7.68 -51.93 -0.40 0.91 16 28 H 0.07 1.48 5.45 -51.92 -0.28 1.19 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.34 4.32 9.08 -39.29 -0.36 3.97 16 32 H 0.34 4.55 9.08 -39.29 -0.36 4.20 16 33 H 0.06 1.33 6.71 -51.93 -0.35 0.98 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 268.27 15.07 4.04 4.04 Total: -1.00 -26.96 268.27 -8.21 -35.18 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.24 Total: 8.57 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.61 Total: -16.55 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.38 Total: -47.06 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.96 -8.21 -35.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246867880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.145 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds