Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 H 1.09008 * 109.47489 * 303.39722 * 3 2 1 5 5 C 1.50700 * 109.47449 * 183.39785 * 3 2 1 6 6 H 1.08002 * 120.00055 * 243.10716 * 5 3 2 7 7 C 1.37879 * 119.99713 * 63.10337 * 5 3 2 8 8 N 1.31509 * 120.00093 * 7.05529 * 7 5 3 9 9 Si 1.86801 * 119.99639 * 187.05362 * 7 5 3 10 10 H 1.48501 * 109.47374 * 84.99080 * 9 7 5 11 11 H 1.48504 * 109.46894 * 204.98930 * 9 7 5 12 12 H 1.48495 * 109.47440 * 324.99135 * 9 7 5 13 13 N 1.46901 * 109.47253 * 63.39353 * 3 2 1 14 14 C 1.48569 * 110.99686 * 69.87463 * 13 3 2 15 15 C 1.54375 * 104.59313 * 159.03816 * 14 13 3 16 16 H 1.09003 * 117.60223 * 117.24992 * 15 14 13 17 17 C 1.53006 * 118.12929 * 272.77158 * 15 14 13 18 18 C 1.53001 * 60.54342 * 91.67156 * 17 15 14 19 19 N 1.46897 * 119.52547 * 111.74398 * 18 17 15 20 20 C 1.48562 * 111.00200 * 185.28874 * 13 3 2 21 21 H 1.08998 * 109.47163 * 60.00126 * 1 2 3 22 22 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47022 * 299.99639 * 1 2 3 24 24 H 1.08994 * 109.47007 * 240.00407 * 2 1 3 25 25 H 1.08998 * 109.47163 * 119.99874 * 2 1 3 26 26 H 0.97000 * 119.99860 * 179.97438 * 8 7 5 27 27 H 1.08996 * 110.41225 * 277.81888 * 14 13 3 28 28 H 1.09010 * 110.40897 * 40.26297 * 14 13 3 29 29 H 1.09003 * 117.44039 * 199.31596 * 17 15 14 30 30 H 1.08993 * 117.44507 * 344.06282 * 17 15 14 31 31 H 1.00897 * 111.00409 * 109.30001 * 19 18 17 32 32 H 1.00906 * 110.99595 * 233.25539 * 19 18 17 33 33 H 1.08999 * 110.41322 * 319.74958 * 20 13 3 34 34 H 1.09005 * 110.40799 * 82.18652 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9737 -0.8580 5 6 3.5446 1.4435 -0.0842 6 1 4.1306 1.8503 0.7267 7 6 4.1731 0.9249 -1.1965 8 7 3.4638 0.5573 -2.2410 9 14 6.0323 0.7445 -1.2195 10 1 6.4129 -0.5409 -0.5807 11 1 6.5137 0.7608 -2.6243 12 1 6.6482 1.8701 -0.4721 13 7 1.6184 2.1109 1.2383 14 6 2.3463 1.5646 2.4126 15 6 2.2290 2.6647 3.4892 16 1 1.6959 2.4180 4.4074 17 6 3.2815 3.7752 3.5035 18 6 1.9921 3.9709 2.7036 19 7 1.0116 4.9721 3.1444 20 6 1.9862 3.5502 1.2183 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9060 0.1928 -3.0236 27 1 1.8755 0.6439 2.7570 28 1 3.3924 1.3873 2.1626 29 1 3.3939 4.3489 4.4235 30 1 4.1997 3.6044 2.9416 31 1 0.9896 5.7590 2.5133 32 1 0.0950 4.5617 3.2427 33 1 2.9758 3.6836 0.7813 34 1 1.2441 4.1244 0.6635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246867880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 14.143159 kcal Electronic energy + Delta-G solvation = -14678.999363 eV Core-core repulsion = 12418.611210 eV Total energy + Delta-G solvation = -2260.388154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.95515 -37.22724 -34.18917 -32.98244 -32.11561 -28.67831 -28.41013 -25.80312 -23.76093 -21.86444 -21.06136 -20.20335 -18.40114 -17.24732 -16.67137 -16.15707 -15.81597 -15.40896 -14.93540 -14.43034 -14.00727 -13.85153 -13.60949 -13.36051 -13.07710 -12.80878 -12.69241 -12.47607 -12.08759 -11.85566 -11.61979 -11.50910 -11.15945 -11.12266 -10.61857 -10.44184 -9.69699 -9.03227 -8.10584 -6.27670 1.35672 1.37865 1.45260 2.37918 2.69914 3.12094 3.28525 3.50385 3.78322 3.96853 4.25166 4.38272 4.52959 4.67461 4.69538 4.83856 4.87872 4.92543 4.98220 5.03856 5.10342 5.20077 5.34420 5.37854 5.42442 5.59076 5.71594 5.91372 6.11714 6.22693 6.29595 6.40478 6.58311 6.91914 7.41591 8.89389 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.011856 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.939837 B = 2361.114470 C = 2928.507298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C 0.208 3.792 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.503 5.503 14 C 0.058 3.942 15 C -0.153 4.153 16 H 0.129 0.871 17 C -0.125 4.125 18 C 0.029 3.971 19 N -0.794 5.794 20 C 0.051 3.949 21 H 0.032 0.968 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.351 0.649 32 H 0.349 0.651 33 H 0.031 0.969 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 4.116 8.892 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.135 4.135 3 C 0.100 3.900 4 H 0.021 0.979 5 C -0.591 4.591 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.226 5.226 14 C -0.070 4.070 15 C -0.172 4.172 16 H 0.147 0.853 17 C -0.163 4.163 18 C -0.066 4.066 19 N -0.324 5.324 20 C -0.080 4.080 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.050 0.950 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.108 4.025 9.381 10.671 hybrid contribution 1.454 -0.368 -1.698 2.266 sum -1.654 3.657 7.682 8.668 Atomic orbital electron populations 1.21576 0.96035 1.00033 1.00769 1.21299 0.94744 0.97859 0.99606 1.19153 0.92083 0.91610 0.87108 0.97892 1.21924 0.93701 1.40314 1.03207 0.92530 1.25611 1.01838 0.95221 0.95034 1.70054 1.36875 1.43266 1.04867 0.85795 0.81450 0.78684 0.77108 1.20014 1.21088 1.19635 1.65802 1.51643 1.01463 1.03686 1.22602 0.97833 0.96722 0.89817 1.23598 1.04461 0.89425 0.99726 0.85326 1.23220 0.91855 0.99683 1.01545 1.22281 0.98273 0.96169 0.89878 1.58498 1.10543 1.09191 1.54157 1.22907 0.99009 0.91174 0.94919 0.94891 0.93265 0.92284 0.93398 0.94694 0.92914 0.90868 0.93854 0.86135 0.90439 0.83480 0.83683 0.95037 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.79 71.98 0.70 -4.32 16 2 C -0.10 -4.56 5.25 30.60 0.16 -4.40 16 3 C 0.21 10.37 1.66 44.17 0.07 10.44 16 4 H 0.00 0.18 8.13 -2.38 -0.02 0.16 16 5 C -0.55 -29.52 6.54 25.60 0.17 -29.35 16 6 H 0.06 3.02 5.65 -2.91 -0.02 3.00 16 7 C 0.02 1.27 5.21 84.66 0.44 1.71 16 8 N -0.91 -52.24 11.88 21.45 0.25 -51.98 16 9 Si 0.94 43.27 29.54 68.60 2.03 45.30 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.50 -21.04 4.74 -860.68 -4.08 -25.12 16 14 C 0.06 2.24 5.29 86.45 0.46 2.69 16 15 C -0.15 -4.78 7.13 -9.90 -0.07 -4.85 16 16 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 17 C -0.12 -3.70 10.05 30.60 0.31 -3.39 16 18 C 0.03 0.90 3.62 4.42 0.02 0.91 16 19 N -0.79 -20.05 9.91 -148.06 -1.47 -21.52 16 20 C 0.05 1.96 6.07 86.45 0.52 2.49 16 21 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.06 2.22 7.70 -2.38 -0.02 2.20 16 24 H 0.05 2.55 6.53 -2.39 -0.02 2.53 16 25 H 0.03 1.60 7.11 -2.39 -0.02 1.58 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.07 2.71 7.68 -2.39 -0.02 2.69 16 28 H 0.04 1.89 5.45 -2.38 -0.01 1.87 16 29 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.35 7.93 9.08 -89.70 -0.81 7.12 16 32 H 0.35 8.17 9.08 -89.69 -0.81 7.35 16 33 H 0.03 1.40 6.71 -2.39 -0.02 1.39 16 34 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -57.80 268.27 -1.02 -58.82 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.53 Total: 22.58 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 2.78 Total: -28.07 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -5.30 Total: -98.63 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -57.80 -1.02 -58.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246867880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.960 kcal (2) G-P(sol) polarization free energy of solvation -57.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds