Wall clock time and date at job start Sun Mar 29 2020 21:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47126 * 2 1 4 4 H 1.08995 * 109.47160 * 305.94131 * 3 2 1 5 5 C 1.50709 * 109.46806 * 185.94053 * 3 2 1 6 6 H 1.07998 * 119.99725 * 275.00073 * 5 3 2 7 7 C 1.37875 * 119.99685 * 95.00515 * 5 3 2 8 8 N 1.31515 * 119.99438 * 184.81967 * 7 5 3 9 9 Si 1.86798 * 120.00298 * 4.81656 * 7 5 3 10 10 H 1.48501 * 109.46887 * 84.85837 * 9 7 5 11 11 H 1.48495 * 109.46919 * 204.85653 * 9 7 5 12 12 H 1.48497 * 109.47006 * 324.86064 * 9 7 5 13 13 N 1.46906 * 109.46945 * 65.94706 * 3 2 1 14 14 C 1.52623 * 110.90388 * 271.65009 * 13 3 2 15 15 C 1.49560 * 80.24332 * 204.21114 * 14 13 3 16 16 H 1.08997 * 113.42442 * 290.96325 * 15 14 13 17 17 C 1.50727 * 130.99989 * 132.81203 * 15 14 13 18 18 N 1.49411 * 104.88337 * 237.97766 * 17 15 14 19 19 C 1.49932 * 106.55426 * 8.62614 * 18 17 15 20 20 C 1.43049 * 110.99827 * 179.97438 * 13 3 2 21 21 H 1.09000 * 112.27589 * 39.66230 * 20 13 3 22 22 H 1.09004 * 109.46872 * 59.99766 * 1 2 3 23 23 H 1.08992 * 109.47293 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46844 * 300.00351 * 1 2 3 25 25 H 1.09004 * 109.47245 * 240.00238 * 2 1 3 26 26 H 1.08997 * 109.47502 * 120.00069 * 2 1 3 27 27 H 0.97002 * 119.99550 * 180.02562 * 8 7 5 28 28 H 1.08996 * 115.04145 * 91.31913 * 14 13 3 29 29 H 1.08993 * 114.24633 * 317.10039 * 14 13 3 30 30 H 1.09005 * 110.35139 * 119.12547 * 17 15 14 31 31 H 1.08994 * 110.35734 * 356.83346 * 17 15 14 32 32 H 1.00902 * 111.00272 * 247.65393 * 18 17 15 33 33 H 1.09003 * 110.84560 * 144.82830 * 19 18 17 34 34 H 1.09000 * 110.84096 * 268.42380 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5924 1.9862 -0.8320 5 6 3.5399 1.4450 -0.1471 6 1 4.1680 1.3323 0.7242 7 6 4.1100 1.5913 -1.3939 8 7 5.4142 1.4987 -1.5354 9 14 3.0301 1.9209 -2.8819 10 1 2.7630 3.3779 -2.9867 11 1 3.7236 1.4553 -4.1097 12 1 1.7452 1.1916 -2.7323 13 7 1.6710 2.0924 1.2648 14 6 0.2890 2.7324 1.1653 15 6 0.8742 3.5624 2.2632 16 1 1.0224 3.0107 3.1915 17 6 0.8942 5.0551 2.4712 18 7 2.3427 5.4107 2.5604 19 6 3.1092 4.1759 2.1922 20 6 2.1335 3.4456 1.2999 21 1 2.0182 3.9467 0.3388 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8154 1.6020 -2.4125 28 1 -0.5390 2.0919 1.4686 29 1 0.1101 3.2684 0.2332 30 1 0.3820 5.3157 3.3974 31 1 0.4307 5.5621 1.6250 32 1 2.5822 5.7213 3.4901 33 1 4.0175 4.4315 1.6464 34 1 3.3414 3.5850 3.0782 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246913502.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:06 Heat of formation + Delta-G solvation = 98.052316 kcal Electronic energy + Delta-G solvation = -14814.387306 eV Core-core repulsion = 12557.637727 eV Total energy + Delta-G solvation = -2256.749580 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.06475 -35.93055 -33.34482 -31.94160 -29.24694 -27.69493 -25.91176 -24.07584 -22.54595 -20.76165 -19.91283 -18.62224 -17.00651 -15.98843 -15.05174 -14.82118 -14.25042 -13.88527 -13.21251 -12.95728 -12.83594 -12.40704 -11.99125 -11.93372 -11.74320 -11.25147 -11.13705 -10.92707 -10.89000 -10.52321 -9.99778 -9.82898 -9.70559 -9.05089 -8.64534 -8.56189 -8.27562 -8.06832 -6.12522 -4.11754 3.22747 3.32107 3.33040 3.89482 4.36108 4.43494 4.90613 5.16600 5.22490 5.45188 5.62251 5.75630 5.79434 5.88662 5.94522 6.00610 6.11710 6.18079 6.26256 6.38431 6.44552 6.56850 6.64059 6.68580 6.71458 6.86921 6.94967 7.18970 7.44498 7.55917 7.70966 7.91869 8.54345 8.96931 9.50964 11.00586 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028287 B = 0.013355 C = 0.010671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.608889 B = 2096.036234 C = 2623.256127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C 0.137 3.863 4 H 0.013 0.987 5 C -0.505 4.505 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.424 5.424 14 C 0.011 3.989 15 C -0.181 4.181 16 H 0.101 0.899 17 C 0.059 3.941 18 N -0.677 5.677 19 C 0.069 3.931 20 C 0.034 3.966 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.264 0.736 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.333 0.667 33 H 0.085 0.915 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 4.012 5.525 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C 0.029 3.971 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.695 3.305 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.147 5.147 14 C -0.117 4.117 15 C -0.202 4.202 16 H 0.119 0.881 17 C -0.070 4.070 18 N -0.305 5.305 19 C -0.060 4.060 20 C -0.077 4.077 21 H 0.090 0.910 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.379 3.831 5.242 11.407 hybrid contribution -0.578 0.019 -0.940 1.104 sum -9.957 3.849 4.302 11.510 Atomic orbital electron populations 1.22073 0.98602 1.00019 1.00943 1.21599 0.92521 0.98920 1.01181 1.20464 0.97040 0.91922 0.87630 0.96932 1.20862 0.88709 1.49885 0.94890 0.90411 1.24990 0.94741 0.94541 0.98450 1.69891 1.09801 1.49645 1.23896 0.86988 0.81391 0.79082 0.82994 1.20230 1.21309 1.18884 1.70301 1.00569 1.09973 1.33904 1.24001 0.94933 0.96306 0.96457 1.23934 1.02492 0.95033 0.98698 0.88103 1.21859 0.89979 0.94321 1.00888 1.63812 1.03473 1.31719 1.31516 1.21957 0.96491 0.89496 0.98050 1.23381 0.94603 0.92694 0.97027 0.90985 0.94163 0.94286 0.92378 0.92850 0.92296 0.92574 0.89569 0.91264 0.92925 0.91011 0.85304 0.89694 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.23 37.16 0.34 -2.45 16 2 C -0.10 -2.23 5.59 -26.73 -0.15 -2.38 16 3 C 0.14 3.20 1.08 -68.85 -0.07 3.13 16 4 H 0.01 0.31 4.78 -51.93 -0.25 0.06 16 5 C -0.51 -14.01 8.22 -34.44 -0.28 -14.29 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -27.09 13.96 55.43 0.77 -26.32 16 9 Si 0.87 21.45 26.99 -169.99 -4.59 16.86 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.26 6.82 56.52 0.39 -5.88 16 13 N -0.42 -8.75 5.76 -328.15 -1.89 -10.65 16 14 C 0.01 0.19 6.28 -17.87 -0.11 0.08 16 15 C -0.18 -2.89 4.39 -94.58 -0.42 -3.31 16 16 H 0.10 1.65 8.05 -51.93 -0.42 1.23 16 17 C 0.06 0.83 7.37 -3.56 -0.03 0.80 16 18 N -0.68 -10.32 7.62 -111.77 -0.85 -11.17 16 19 C 0.07 1.25 7.33 -3.10 -0.02 1.22 16 20 C 0.03 0.67 3.13 -83.03 -0.26 0.41 16 21 H 0.07 1.57 7.43 -51.93 -0.39 1.19 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.95 5.14 -51.93 -0.27 0.68 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.09 1.29 6.25 -51.93 -0.32 0.97 16 29 H 0.07 1.17 7.43 -51.93 -0.39 0.78 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.33 4.23 8.94 -39.29 -0.35 3.88 16 33 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 262.96 15.07 3.96 3.96 Total: -1.00 -29.38 262.96 -9.03 -38.40 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.34 Total: 3.65 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.10 Total: -14.74 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -1.97 Total: -48.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.86 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.38 -9.03 -38.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246913502.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.457 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds