Wall clock time and date at job start Sun Mar 29 2020 21:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47126 * 2 1 4 4 H 1.08995 * 109.47160 * 305.94131 * 3 2 1 5 5 C 1.50709 * 109.46806 * 185.94053 * 3 2 1 6 6 H 1.07998 * 119.99725 * 275.00073 * 5 3 2 7 7 C 1.37875 * 119.99685 * 95.00515 * 5 3 2 8 8 N 1.31515 * 119.99438 * 184.81967 * 7 5 3 9 9 Si 1.86798 * 120.00298 * 4.81656 * 7 5 3 10 10 H 1.48501 * 109.46887 * 84.85837 * 9 7 5 11 11 H 1.48495 * 109.46919 * 204.85653 * 9 7 5 12 12 H 1.48497 * 109.47006 * 324.86064 * 9 7 5 13 13 N 1.46906 * 109.46945 * 65.94706 * 3 2 1 14 14 C 1.52623 * 110.90388 * 271.65009 * 13 3 2 15 15 C 1.49560 * 80.24332 * 204.21114 * 14 13 3 16 16 H 1.08997 * 113.42442 * 290.96325 * 15 14 13 17 17 C 1.50727 * 130.99989 * 132.81203 * 15 14 13 18 18 N 1.49411 * 104.88337 * 237.97766 * 17 15 14 19 19 C 1.49932 * 106.55426 * 8.62614 * 18 17 15 20 20 C 1.43049 * 110.99827 * 179.97438 * 13 3 2 21 21 H 1.09000 * 112.27589 * 39.66230 * 20 13 3 22 22 H 1.09004 * 109.46872 * 59.99766 * 1 2 3 23 23 H 1.08992 * 109.47293 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46844 * 300.00351 * 1 2 3 25 25 H 1.09004 * 109.47245 * 240.00238 * 2 1 3 26 26 H 1.08997 * 109.47502 * 120.00069 * 2 1 3 27 27 H 0.97002 * 119.99550 * 180.02562 * 8 7 5 28 28 H 1.08996 * 115.04145 * 91.31913 * 14 13 3 29 29 H 1.08993 * 114.24633 * 317.10039 * 14 13 3 30 30 H 1.09005 * 110.35139 * 119.12547 * 17 15 14 31 31 H 1.08994 * 110.35734 * 356.83346 * 17 15 14 32 32 H 1.00902 * 111.00272 * 247.65393 * 18 17 15 33 33 H 1.09003 * 110.84560 * 144.82830 * 19 18 17 34 34 H 1.09000 * 110.84096 * 268.42380 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5924 1.9862 -0.8320 5 6 3.5399 1.4450 -0.1471 6 1 4.1680 1.3323 0.7242 7 6 4.1100 1.5913 -1.3939 8 7 5.4142 1.4987 -1.5354 9 14 3.0301 1.9209 -2.8819 10 1 2.7630 3.3779 -2.9867 11 1 3.7236 1.4553 -4.1097 12 1 1.7452 1.1916 -2.7323 13 7 1.6710 2.0924 1.2648 14 6 0.2890 2.7324 1.1653 15 6 0.8742 3.5624 2.2632 16 1 1.0224 3.0107 3.1915 17 6 0.8942 5.0551 2.4712 18 7 2.3427 5.4107 2.5604 19 6 3.1092 4.1759 2.1922 20 6 2.1335 3.4456 1.2999 21 1 2.0182 3.9467 0.3388 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8154 1.6020 -2.4125 28 1 -0.5390 2.0919 1.4686 29 1 0.1101 3.2684 0.2332 30 1 0.3820 5.3157 3.3974 31 1 0.4307 5.5621 1.6250 32 1 2.5822 5.7213 3.4901 33 1 4.0175 4.4315 1.6464 34 1 3.3414 3.5850 3.0782 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246913502.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:06 Heat of formation + Delta-G solvation = 73.052679 kcal Electronic energy + Delta-G solvation = -14815.471372 eV Core-core repulsion = 12557.637727 eV Total energy + Delta-G solvation = -2257.833645 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.52764 -37.47363 -35.08252 -33.86382 -30.78848 -29.22864 -27.49241 -25.64494 -24.20358 -22.27385 -21.39699 -20.24065 -19.12250 -17.41962 -16.57307 -16.29250 -16.11976 -15.29122 -14.79318 -14.69597 -14.57263 -13.98970 -13.51957 -13.48379 -13.19432 -12.91993 -12.71505 -12.60442 -12.21973 -12.19707 -11.89412 -11.66273 -11.24123 -10.99268 -10.77540 -10.08407 -9.74587 -9.47897 -8.33617 -6.36450 1.26055 1.27662 1.37887 2.27534 2.45453 3.04402 3.11361 3.54476 3.85705 4.09161 4.22171 4.35154 4.40434 4.44093 4.45504 4.63794 4.70942 4.79145 4.82764 4.91786 4.94114 5.00926 5.11895 5.24885 5.34834 5.38592 5.44632 5.58454 5.71036 5.77082 6.08925 6.44332 6.51530 6.70622 7.29732 8.83667 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028287 B = 0.013355 C = 0.010671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.608889 B = 2096.036234 C = 2623.256127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C 0.141 3.859 4 H 0.010 0.990 5 C -0.502 4.502 6 H 0.028 0.972 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.932 3.068 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.243 1.243 13 N -0.442 5.442 14 C 0.020 3.980 15 C -0.143 4.143 16 H 0.102 0.898 17 C 0.063 3.937 18 N -0.677 5.677 19 C 0.073 3.927 20 C -0.002 4.002 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.265 0.735 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.350 0.650 33 H 0.054 0.946 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 4.668 5.996 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C 0.033 3.967 4 H 0.027 0.973 5 C -0.540 4.540 6 H 0.046 0.954 7 C -0.181 4.181 8 N -0.586 5.586 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.167 1.167 13 N -0.165 5.165 14 C -0.107 4.107 15 C -0.163 4.163 16 H 0.120 0.880 17 C -0.066 4.066 18 N -0.307 5.307 19 C -0.056 4.056 20 C -0.113 4.113 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.072 0.928 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.766 4.490 5.740 14.700 hybrid contribution 0.525 -0.174 -0.949 1.098 sum -12.242 4.316 4.791 13.836 Atomic orbital electron populations 1.21963 0.94784 1.01906 1.01918 1.21512 0.95899 0.97050 0.99864 1.20334 0.93760 0.93472 0.89107 0.97251 1.21047 0.91157 1.48695 0.93142 0.95399 1.25822 0.95949 0.94603 1.01737 1.70047 1.11917 1.51920 1.24698 0.85959 0.80268 0.79267 0.78911 1.19656 1.21075 1.16665 1.70311 1.03558 1.10676 1.31968 1.24059 0.93374 0.96310 0.96973 1.23857 0.98457 0.96464 0.97519 0.87953 1.21932 0.89140 0.92568 1.02956 1.63682 1.04093 1.29964 1.32999 1.21780 0.95767 0.90567 0.97514 1.23434 0.98208 0.92320 0.97351 0.93306 0.93569 0.92054 0.90914 0.94560 0.93406 0.92575 0.86803 0.90994 0.89292 0.90637 0.83398 0.92765 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.23 71.98 0.66 -4.03 16 2 C -0.10 -4.39 5.59 30.60 0.17 -4.22 16 3 C 0.14 6.58 1.08 44.17 0.05 6.62 16 4 H 0.01 0.46 4.78 -2.39 -0.01 0.45 16 5 C -0.50 -28.98 8.22 25.60 0.21 -28.77 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.02 0.98 5.47 84.65 0.46 1.44 16 8 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 9 Si 0.93 44.74 26.99 68.60 1.85 46.59 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.24 -10.75 6.82 99.48 0.68 -10.07 16 13 N -0.44 -17.84 5.76 ******* -6.87 -24.71 16 14 C 0.02 0.62 6.28 73.93 0.46 1.08 16 15 C -0.14 -4.12 4.39 -8.93 -0.04 -4.16 16 16 H 0.10 2.99 8.05 -2.39 -0.02 2.97 16 17 C 0.06 1.54 7.37 85.08 0.63 2.16 16 18 N -0.68 -19.37 7.62 -507.51 -3.87 -23.24 16 19 C 0.07 2.68 7.33 85.08 0.62 3.30 16 20 C 0.00 -0.07 3.13 37.02 0.12 0.04 16 21 H 0.05 2.15 7.43 -2.39 -0.02 2.13 16 22 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 2.07 5.14 -2.39 -0.01 2.06 16 25 H 0.04 1.60 8.14 -2.38 -0.02 1.59 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.11 2.84 6.25 -2.39 -0.01 2.83 16 29 H 0.07 2.19 7.43 -2.39 -0.02 2.17 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.35 8.01 8.94 -89.69 -0.80 7.21 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.58 262.96 -4.99 -71.57 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.25 Total: 15.90 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.35 Total: -26.53 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -10.44 Total: -107.52 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.85 Total: 46.59 kcal Total: -66.58 -4.99 -71.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246913502.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.623 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds