Wall clock time and date at job start Sun Mar 29 2020 21:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34949 * 126.03292 * 124.99906 * 5 4 3 7 7 C 1.35318 * 107.74247 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.04120 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47100 * 270.00229 * 8 7 6 10 10 H 1.07999 * 120.00573 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00210 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99749 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00375 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46845 * 60.00092 * 13 11 9 15 15 H 1.48506 * 109.47250 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47237 * 299.99826 * 13 11 9 17 17 C 1.39875 * 107.92186 * 0.02562 * 7 6 5 18 18 N 1.30839 * 108.20184 * 359.97438 * 17 7 6 19 19 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47069 * 300.00287 * 1 2 3 21 21 H 1.09005 * 109.47097 * 60.00159 * 1 2 3 22 22 H 1.09001 * 109.47410 * 59.99905 * 3 2 1 23 23 H 1.08995 * 109.47234 * 299.99855 * 3 2 1 24 24 H 1.08998 * 109.47319 * 60.00169 * 4 3 2 25 25 H 1.09005 * 109.47113 * 299.99871 * 4 3 2 26 26 H 1.07997 * 126.13040 * 0.03555 * 6 5 4 27 27 H 1.09003 * 109.47079 * 30.00095 * 8 7 6 28 28 H 1.09002 * 109.47262 * 149.99741 * 8 7 6 29 29 H 0.96994 * 120.00185 * 180.02562 * 12 11 9 30 30 H 1.08003 * 125.89835 * 179.73925 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0257 2.9933 0.8957 7 6 5.3263 4.2660 0.5480 8 6 6.2850 5.1790 1.2680 9 6 5.5413 5.9570 2.3228 10 1 4.4806 5.8059 2.4580 11 6 6.2152 6.8619 3.1154 12 7 7.5071 7.0457 2.9511 13 14 5.2933 7.8269 4.4224 14 1 4.6817 6.8849 5.3939 15 1 6.2383 8.7257 5.1329 16 1 4.2274 8.6369 3.7800 17 6 4.5901 4.5845 -0.5979 18 7 3.8736 3.5402 -0.9266 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6886 1.8464 0.8900 23 1 1.6887 1.8463 -0.8900 24 1 3.8575 0.6435 -0.8891 25 1 3.8567 0.6437 0.8909 26 1 5.4298 2.4509 1.7376 27 1 7.0680 4.5849 1.7392 28 1 6.7332 5.8706 0.5547 29 1 7.9812 7.6820 3.5089 30 1 4.6070 5.5304 -1.1189 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054718.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:21 Heat of formation + Delta-G solvation = 24.609572 kcal Electronic energy + Delta-G solvation = -13195.437666 eV Core-core repulsion = 10799.670276 eV Total energy + Delta-G solvation = -2395.767391 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.47889 -38.05354 -33.91764 -32.83310 -30.41878 -29.29267 -26.89007 -25.87142 -23.35444 -22.60559 -20.08987 -19.29640 -16.94872 -16.33247 -16.19254 -15.59505 -15.30052 -14.46354 -14.25280 -13.53949 -13.26451 -12.42889 -12.31533 -12.24149 -11.73876 -11.61179 -11.39681 -11.16771 -10.79511 -10.57121 -10.05043 -9.85054 -9.50486 -9.35509 -8.77242 -8.34273 -7.44076 -5.96037 -3.99143 2.49022 2.83689 3.35252 3.39470 3.41875 3.70641 3.80006 4.50775 4.74221 4.89236 5.13043 5.18493 5.24127 5.37181 5.42655 5.46567 5.58406 5.68011 5.81494 6.40136 6.57749 6.87787 6.91002 7.40351 7.59455 7.73984 7.83904 8.00595 8.39078 8.45608 9.06187 9.64215 11.13276 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042264 B = 0.006173 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.346621 B = 4534.982530 C = 4913.971676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.394 6.394 3 C 0.051 3.949 4 C 0.147 3.853 5 N -0.389 5.389 6 C 0.030 3.970 7 C -0.178 4.178 8 C 0.084 3.916 9 C -0.508 4.508 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.050 3.950 18 N -0.317 5.317 19 H 0.087 0.913 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.166 0.834 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 -11.263 -4.624 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.312 6.312 3 C -0.026 4.026 4 C 0.024 3.976 5 N -0.175 5.175 6 C -0.112 4.112 7 C -0.189 4.189 8 C 0.046 3.954 9 C -0.547 4.547 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.136 4.136 18 N -0.139 5.139 19 H 0.105 0.895 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.184 0.816 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.164 -11.959 -5.362 16.586 hybrid contribution -0.139 1.171 1.435 1.857 sum -10.304 -10.788 -3.928 15.426 Atomic orbital electron populations 1.22741 0.80485 1.02700 1.00285 1.87761 1.20179 1.27640 1.95603 1.22742 0.93387 0.84638 1.01883 1.21136 0.91796 0.80361 1.04277 1.48162 1.35587 1.11183 1.22614 1.22261 0.96089 0.96517 0.96380 1.20951 1.04973 0.94783 0.98152 1.17667 0.91844 0.92049 0.93857 1.21132 0.94966 1.21688 1.16877 0.92846 1.25003 0.94852 0.97037 0.97488 1.69943 1.07634 1.35953 1.40088 0.86658 0.79564 0.79939 0.81832 1.20381 1.21307 1.20288 1.23815 0.95511 0.97200 0.97096 1.77111 1.25105 0.97196 1.14499 0.89487 0.93922 0.93908 0.92679 0.91774 0.89765 0.88357 0.81634 0.95800 0.95493 0.92926 0.80568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.78 10.70 -35.23 -0.38 -5.16 16 3 C 0.05 0.66 6.12 37.16 0.23 0.89 16 4 C 0.15 1.97 6.88 -4.04 -0.03 1.94 16 5 N -0.39 -6.85 3.68 -61.36 -0.23 -7.08 16 6 C 0.03 0.57 11.36 -17.22 -0.20 0.37 16 7 C -0.18 -3.93 5.29 -105.05 -0.56 -4.48 16 8 C 0.08 2.16 5.46 -29.04 -0.16 2.01 16 9 C -0.51 -14.27 9.09 -34.44 -0.31 -14.58 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.05 1.01 11.96 -17.36 -0.21 0.80 16 18 N -0.32 -6.17 12.42 30.63 0.38 -5.79 16 19 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.10 1.12 8.07 -51.93 -0.42 0.70 16 26 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.18 3.21 8.06 -52.48 -0.42 2.79 16 LS Contribution 268.95 15.07 4.05 4.05 Total: -1.00 -31.50 268.95 -4.86 -36.35 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.19 Total: -3.05 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.22 Total: -10.11 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.89 Total: -38.67 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.38 Total: -5.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.50 -4.86 -36.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054718.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.963 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds