Wall clock time and date at job start Sun Mar 29 2020 22:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35728 * 117.00007 * 2 1 4 4 N 1.32211 * 119.69741 * 359.97438 * 3 2 1 5 5 C 1.31967 * 121.67433 * 180.02562 * 4 3 2 6 6 C 1.38065 * 120.87467 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.34631 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47465 * 89.99646 * 7 6 5 9 9 H 1.08002 * 119.99441 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00075 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00481 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99886 * 179.73007 * 10 8 7 13 13 H 1.48502 * 109.46964 * 270.27509 * 12 10 8 14 14 H 1.48505 * 109.47036 * 30.26897 * 12 10 8 15 15 H 1.48490 * 109.47395 * 150.27411 * 12 10 8 16 16 C 1.38791 * 119.30909 * 0.24905 * 6 5 4 17 17 C 1.38579 * 118.46398 * 359.53441 * 16 6 5 18 18 F 1.35102 * 120.46549 * 180.21858 * 17 16 6 19 19 H 1.09000 * 109.46825 * 60.00222 * 1 2 3 20 20 H 1.08996 * 109.46854 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47308 * 300.00263 * 1 2 3 22 22 H 1.07995 * 119.56566 * 179.97438 * 5 4 3 23 23 H 1.09009 * 109.47290 * 330.00017 * 7 6 5 24 24 H 1.08998 * 109.47607 * 210.00442 * 7 6 5 25 25 H 0.97005 * 119.99656 * 359.72741 * 11 10 8 26 26 H 1.08001 * 120.77035 * 179.72196 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 7 1.3193 2.3143 -0.0005 5 6 1.8775 3.5101 -0.0010 6 6 3.2510 3.6509 -0.0016 7 6 3.8758 5.0223 -0.0028 8 6 4.0845 5.4805 1.4176 9 1 3.7941 4.8422 2.2391 10 6 4.6461 6.7144 1.6684 11 7 5.0002 7.4914 0.6682 12 14 4.8978 7.2855 3.4291 13 1 3.6881 8.0121 3.8916 14 1 5.1320 6.1078 4.3029 15 1 6.0733 8.1906 3.4927 16 6 4.0502 2.5162 -0.0069 17 6 3.4346 1.2747 -0.0015 18 9 4.1736 0.1437 -0.0019 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.2518 4.3903 -0.0019 23 1 3.2164 5.7216 -0.5169 24 1 4.8361 4.9836 -0.5169 25 1 4.8698 7.1947 -0.2461 26 1 5.1271 2.5989 -0.0119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056279.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:40 Heat of formation + Delta-G solvation = -81.158019 kcal Electronic energy + Delta-G solvation = -13345.350457 eV Core-core repulsion = 10723.817672 eV Total energy + Delta-G solvation = -2621.532785 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.99638 -41.60879 -39.18249 -35.93841 -33.66672 -32.27103 -29.20960 -27.80718 -25.37313 -24.63154 -22.97568 -19.57166 -19.07271 -18.78414 -17.92442 -17.51407 -16.20214 -16.17994 -15.78073 -15.56122 -15.26724 -14.50581 -14.23579 -14.05541 -13.74599 -13.31223 -12.84739 -12.51168 -12.38644 -12.20992 -11.92434 -11.16797 -10.89819 -10.61991 -10.55425 -9.35981 -8.64541 -6.40308 -0.16355 0.06002 1.56159 1.63278 1.81390 1.88044 2.47133 2.61118 2.98998 3.15701 3.21029 3.62925 3.92531 4.13047 4.37812 4.41191 4.46508 4.71096 4.75141 4.90082 5.03546 5.30168 5.42784 5.89327 6.05789 6.15839 6.55326 6.57911 7.38281 8.73515 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046685 B = 0.007413 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.616988 B = 3776.329035 C = 3907.824873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.316 6.316 3 C 0.267 3.733 4 N -0.511 5.511 5 C 0.126 3.874 6 C -0.105 4.105 7 C 0.049 3.951 8 C -0.607 4.607 9 H 0.046 0.954 10 C -0.028 4.028 11 N -0.934 5.934 12 Si 1.116 2.884 13 H -0.272 1.272 14 H -0.274 1.274 15 H -0.283 1.283 16 C -0.079 4.079 17 C 0.024 3.976 18 F -0.130 7.130 19 H 0.060 0.940 20 H 0.129 0.871 21 H 0.057 0.943 22 H 0.178 0.822 23 H 0.020 0.980 24 H 0.012 0.988 25 H 0.261 0.739 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -11.267 -0.860 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.087 3.913 4 N -0.234 5.234 5 C -0.029 4.029 6 C -0.107 4.107 7 C 0.012 3.988 8 C -0.645 4.645 9 H 0.064 0.936 10 C -0.227 4.227 11 N -0.570 5.570 12 Si 0.938 3.062 13 H -0.197 1.197 14 H -0.200 1.200 15 H -0.208 1.208 16 C -0.105 4.105 17 C 0.002 3.998 18 F -0.109 7.109 19 H 0.079 0.921 20 H 0.147 0.853 21 H 0.076 0.924 22 H 0.195 0.805 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.104 -10.436 0.044 12.625 hybrid contribution 0.380 -1.129 -1.143 1.652 sum -6.724 -11.566 -1.099 13.423 Atomic orbital electron populations 1.23151 0.75156 1.05032 1.02555 1.86256 1.24996 1.22971 1.88180 1.19873 0.87968 0.86459 0.97002 1.67435 1.39333 0.98207 1.18432 1.22564 0.92546 0.93699 0.94052 1.20950 0.94595 0.96684 0.98474 1.18184 0.95005 0.88507 0.97111 1.22218 1.45221 1.04905 0.92153 0.93590 1.27231 0.92827 0.93702 1.08897 1.70888 1.46363 1.39501 1.00298 0.82922 0.77425 0.75975 0.69885 1.19714 1.19959 1.20843 1.21521 1.02290 0.89205 0.97507 1.17618 0.86849 0.83320 1.12043 1.91471 1.76288 1.48587 1.94512 0.92111 0.85286 0.92391 0.80464 0.96159 0.96946 0.92964 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.94 15 2 O -0.32 -9.73 10.35 -90.51 -0.94 -10.67 15 3 C 0.27 9.35 7.50 84.84 0.64 9.99 15 4 N -0.51 -17.86 9.22 -308.78 -2.85 -20.71 15 5 C 0.13 4.63 10.85 84.63 0.92 5.55 15 6 C -0.10 -4.25 5.09 -19.77 -0.10 -4.35 15 7 C 0.05 2.37 4.44 29.10 0.13 2.50 15 8 C -0.61 -32.59 9.09 25.60 0.23 -32.36 15 9 H 0.05 2.48 7.74 -2.91 -0.02 2.45 15 10 C -0.03 -1.53 5.46 84.65 0.46 -1.07 15 11 N -0.93 -54.69 13.65 21.45 0.29 -54.40 15 12 Si 1.12 48.46 29.90 68.60 2.05 50.51 15 13 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 16 C -0.08 -2.98 9.84 22.48 0.22 -2.76 15 17 C 0.02 0.86 7.35 22.56 0.17 1.02 15 18 F -0.13 -4.52 17.13 44.97 0.77 -3.75 15 19 H 0.06 1.29 8.10 -2.39 -0.02 1.27 15 20 H 0.13 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.06 1.27 8.10 -2.39 -0.02 1.25 15 22 H 0.18 5.90 8.06 -2.91 -0.02 5.88 15 23 H 0.02 0.99 7.96 -2.38 -0.02 0.97 15 24 H 0.01 0.62 7.96 -2.39 -0.02 0.60 15 25 H 0.26 15.23 7.22 -92.70 -0.67 14.56 15 26 H 0.16 5.53 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -61.09 242.91 4.46 -56.63 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.29 Total: 1.91 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 3.84 Total: -19.53 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -2.55 Total: -75.10 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.94 Total: -10.67 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.77 Total: -3.75 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Total: -61.09 4.46 -56.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056279.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.529 kcal (2) G-P(sol) polarization free energy of solvation -61.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds