Wall clock time and date at job start Sun Mar 29 2020 21:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38992 * 120.00035 * 2 1 4 4 C 1.39070 * 119.68993 * 0.27714 * 3 2 1 5 5 C 1.38376 * 119.15661 * 180.27841 * 4 3 2 6 6 C 1.38766 * 118.53472 * 359.45367 * 5 4 3 7 7 C 1.50696 * 120.34388 * 180.25827 * 6 5 4 8 8 C 1.50702 * 109.47157 * 100.00239 * 7 6 5 9 9 H 1.07999 * 120.00335 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99725 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00342 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99688 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46933 * 90.00303 * 12 10 8 14 14 H 1.48504 * 109.47030 * 210.00116 * 12 10 8 15 15 H 1.48499 * 109.47092 * 329.99967 * 12 10 8 16 16 C 1.38365 * 119.30188 * 0.27443 * 6 5 4 17 17 F 1.35108 * 119.60168 * 180.02562 * 16 6 5 18 18 N 1.32135 * 120.79549 * 0.02562 * 16 6 5 19 19 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47157 * 299.99997 * 1 2 3 21 21 H 1.08994 * 109.47345 * 60.00305 * 1 2 3 22 22 H 0.97005 * 120.00271 * 179.97438 * 2 1 3 23 23 H 1.07995 * 120.41945 * 0.02562 * 4 3 2 24 24 H 1.08002 * 120.73499 * 179.73344 * 5 4 3 25 25 H 1.09005 * 109.46801 * 219.99643 * 7 6 5 26 26 H 1.08992 * 109.47406 * 339.99856 * 7 6 5 27 27 H 0.96996 * 120.00201 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1599 1.2037 0.0000 4 6 1.4581 2.4043 0.0058 5 6 2.1610 3.5962 -0.0001 6 6 3.5479 3.5478 -0.0001 7 6 4.3540 4.8210 -0.0006 8 6 4.8313 5.1139 1.3985 9 1 4.5760 4.4453 2.2073 10 6 5.5939 6.2357 1.6461 11 7 5.9052 7.0497 0.6612 12 14 6.1849 6.5992 3.3805 13 1 7.5061 5.9572 3.5979 14 1 6.3120 8.0675 3.5626 15 1 5.2062 6.0619 4.3597 16 6 4.1826 2.3183 0.0000 17 9 5.5326 2.2642 0.0005 18 7 3.4843 1.1966 -0.0004 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 1.9500 -0.8401 0.0004 23 1 0.3781 2.4064 0.0108 24 1 1.6419 4.5432 -0.0001 25 1 5.2136 4.7065 -0.6611 26 1 3.7326 5.6444 -0.3524 27 1 6.4414 7.8390 0.8354 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056400.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:39 Heat of formation + Delta-G solvation = -30.743147 kcal Electronic energy + Delta-G solvation = -13289.686093 eV Core-core repulsion = 10768.058123 eV Total energy + Delta-G solvation = -2521.627970 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.83727 -41.05890 -36.94680 -35.33825 -33.72641 -31.77623 -28.98854 -26.96066 -24.77761 -24.42491 -22.34899 -19.06950 -18.67991 -18.53088 -16.91059 -16.81448 -16.62925 -15.85692 -15.41229 -15.23033 -14.45587 -14.38647 -14.01702 -13.71487 -13.57422 -13.29010 -12.91405 -12.64645 -12.46829 -11.76142 -11.73855 -10.79776 -10.66988 -10.52553 -10.51535 -8.59049 -8.15340 -6.31845 0.16691 0.47707 1.39530 1.41564 1.52145 2.06494 2.40547 2.82712 3.11582 3.13669 3.86835 4.06041 4.24390 4.40802 4.54157 4.75699 4.78913 4.99647 5.07823 5.24621 5.31424 5.55916 5.71135 5.72963 6.09575 6.17590 6.50317 6.78309 7.05895 7.36077 8.90270 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049377 B = 0.007791 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.930477 B = 3593.190594 C = 3694.038289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.727 5.727 3 C 0.404 3.596 4 C -0.228 4.228 5 C -0.017 4.017 6 C -0.190 4.190 7 C 0.072 3.928 8 C -0.529 4.529 9 H 0.048 0.952 10 C 0.008 3.992 11 N -0.927 5.927 12 Si 0.963 3.037 13 H -0.277 1.277 14 H -0.275 1.275 15 H -0.265 1.265 16 C 0.317 3.683 17 F -0.128 7.128 18 N -0.598 5.598 19 H 0.105 0.895 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.407 0.593 23 H 0.175 0.825 24 H 0.158 0.842 25 H -0.002 1.002 26 H 0.021 0.979 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 -11.200 -0.775 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.360 5.360 3 C 0.166 3.834 4 C -0.252 4.252 5 C -0.042 4.042 6 C -0.196 4.196 7 C 0.034 3.966 8 C -0.567 4.567 9 H 0.066 0.934 10 C -0.191 4.191 11 N -0.567 5.567 12 Si 0.787 3.213 13 H -0.202 1.202 14 H -0.200 1.200 15 H -0.189 1.189 16 C 0.166 3.834 17 F -0.108 7.108 18 N -0.323 5.323 19 H 0.124 0.876 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.242 0.758 23 H 0.193 0.807 24 H 0.176 0.824 25 H 0.016 0.984 26 H 0.040 0.960 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.689 -11.798 -0.818 17.345 hybrid contribution 1.006 0.790 0.636 1.428 sum -11.683 -11.008 -0.182 16.053 Atomic orbital electron populations 1.21880 0.76265 1.04875 1.02151 1.44383 1.07067 1.03760 1.80811 1.18183 0.85555 0.88621 0.91000 1.21674 1.02433 0.90009 1.11060 1.21422 0.91139 0.99936 0.91739 1.20903 0.96577 0.95086 1.07046 1.17839 0.93337 0.89117 0.96267 1.21338 1.32967 1.08309 0.94076 0.93358 1.25865 0.95919 0.95806 1.01493 1.70059 1.38805 1.14389 1.33450 0.85484 0.78733 0.77569 0.79507 1.20244 1.19980 1.18941 1.17622 0.77725 0.89333 0.98767 1.91527 1.28868 1.96994 1.93381 1.66134 1.09310 1.31021 1.25793 0.87598 0.91957 0.91690 0.75767 0.80730 0.82428 0.98409 0.96027 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 9.92 127.77 1.27 2.37 15 2 N -0.73 -15.84 5.88 -366.60 -2.16 -18.00 15 3 C 0.40 12.78 7.65 133.04 1.02 13.80 15 4 C -0.23 -6.55 9.33 22.50 0.21 -6.34 15 5 C -0.02 -0.61 9.81 22.43 0.22 -0.39 15 6 C -0.19 -8.73 5.10 -19.71 -0.10 -8.83 15 7 C 0.07 3.94 4.84 29.10 0.14 4.08 15 8 C -0.53 -31.06 9.09 25.60 0.23 -30.82 15 9 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 10 C 0.01 0.44 5.46 84.66 0.46 0.90 15 11 N -0.93 -56.46 13.29 21.45 0.28 -56.18 15 12 Si 0.96 45.26 29.54 68.60 2.03 47.29 15 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 16 C 0.32 14.70 8.35 84.68 0.71 15.41 15 17 F -0.13 -6.48 16.68 44.97 0.75 -5.73 15 18 N -0.60 -24.13 10.40 -194.34 -2.02 -26.15 15 19 H 0.11 0.68 8.14 -2.39 -0.02 0.66 15 20 H 0.06 0.71 7.91 -2.39 -0.02 0.69 15 21 H 0.06 0.70 7.94 -2.39 -0.02 0.68 15 22 H 0.41 8.23 8.95 -92.70 -0.83 7.40 15 23 H 0.18 3.39 6.70 -2.91 -0.02 3.37 15 24 H 0.16 4.92 8.06 -2.91 -0.02 4.89 15 25 H 0.00 -0.14 7.95 -2.38 -0.02 -0.16 15 26 H 0.02 1.19 8.03 -2.39 -0.02 1.17 15 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 Total: -1.00 -71.13 246.39 3.40 -67.73 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 0.36 Total: 0.85 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.16 Total: -9.81 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.89 Total: -100.32 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.75 Total: -5.73 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.13 3.40 -67.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056400.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.984 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds