Wall clock time and date at job start Sun Mar 29 2020 22:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35961 * 117.00092 * 2 1 4 4 C 1.38627 * 120.44444 * 359.97404 * 3 2 1 5 5 N 1.31896 * 120.71953 * 180.02562 * 4 3 2 6 6 C 1.32024 * 121.74021 * 0.02562 * 5 4 3 7 7 F 1.35098 * 119.58838 * 179.97438 * 6 5 4 8 8 C 1.38518 * 120.82306 * 359.71915 * 6 5 4 9 9 C 1.38495 * 119.19353 * 0.55044 * 8 6 5 10 10 C 1.50698 * 120.79110 * 179.73220 * 9 8 6 11 11 C 1.50706 * 109.47294 * 264.72233 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 H 1.09003 * 109.47036 * 300.00203 * 1 2 3 20 20 H 1.08999 * 109.46610 * 59.99844 * 1 2 3 21 21 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 22 22 H 1.08003 * 119.64360 * 0.04721 * 4 3 2 23 23 H 1.08001 * 120.39734 * 180.30931 * 8 6 5 24 24 H 1.09001 * 109.46665 * 144.72614 * 10 9 8 25 25 H 1.09000 * 109.47722 * 24.72946 * 10 9 8 26 26 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.3003 2.3799 -0.0005 5 7 1.8935 3.5579 -0.0011 6 6 3.2087 3.6733 -0.0016 7 9 3.7705 4.9019 -0.0026 8 6 4.0197 2.5504 0.0042 9 6 3.4351 1.2949 -0.0010 10 6 4.2831 0.0491 -0.0010 11 6 4.4628 -0.4363 -1.4164 12 1 4.0088 0.1037 -2.2341 13 6 5.2068 -1.5695 -1.6673 14 7 5.7593 -2.2273 -0.6714 15 14 5.4302 -2.1707 -3.4218 16 1 6.1004 -1.1165 -4.2247 17 1 6.2657 -3.3984 -3.4218 18 1 4.1026 -2.4749 -4.0136 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 0.2217 2.3250 -0.0002 23 1 5.0948 2.6528 0.0088 24 1 3.7917 -0.7248 0.5888 25 1 5.2576 0.2728 0.4330 26 1 6.2831 -3.0245 -0.8481 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057308.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:48 Heat of formation + Delta-G solvation = -72.003681 kcal Electronic energy + Delta-G solvation = -13522.762147 eV Core-core repulsion = 10901.626324 eV Total energy + Delta-G solvation = -2621.135823 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.95314 -41.61859 -38.88225 -35.94472 -33.96906 -31.10338 -29.71476 -28.29643 -25.81642 -24.02689 -22.83909 -18.97832 -18.70993 -18.62815 -18.30822 -17.14376 -16.52814 -16.44356 -15.74899 -15.43442 -14.52951 -14.44109 -14.41230 -14.07193 -13.75832 -13.15027 -12.72978 -12.68914 -12.50298 -12.23314 -11.96995 -11.70854 -10.62836 -10.59829 -10.43581 -9.26462 -8.21072 -6.32762 -0.04913 0.13209 1.41323 1.43327 1.51514 2.32680 2.39059 2.60472 2.64877 3.11633 3.52187 3.62600 3.85530 4.31453 4.45201 4.46647 4.51169 4.78850 4.80240 4.91797 5.29624 5.50243 5.60827 5.71172 6.10950 6.36817 6.56149 6.76232 7.34706 8.89210 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.010089 C = 0.008398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.552125 B = 2774.513563 C = 3333.486278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.318 6.318 3 C 0.068 3.932 4 C 0.054 3.946 5 N -0.504 5.504 6 C 0.255 3.745 7 F -0.119 7.119 8 C -0.159 4.159 9 C -0.032 4.032 10 C 0.067 3.933 11 C -0.525 4.525 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.269 1.269 19 H 0.077 0.923 20 H 0.071 0.929 21 H 0.115 0.885 22 H 0.204 0.796 23 H 0.156 0.844 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 5.793 0.801 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.230 6.230 3 C 0.019 3.981 4 C -0.103 4.103 5 N -0.219 5.219 6 C 0.101 3.899 7 F -0.098 7.098 8 C -0.180 4.180 9 C -0.040 4.040 10 C 0.031 3.969 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 H 0.095 0.905 20 H 0.090 0.910 21 H 0.133 0.867 22 H 0.220 0.780 23 H 0.173 0.827 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.686 6.225 0.849 11.545 hybrid contribution 0.830 -0.846 -0.660 1.357 sum -8.856 5.379 0.189 10.363 Atomic orbital electron populations 1.23494 0.76192 1.05932 1.02861 1.86287 1.23599 1.25211 1.87893 1.19993 0.92365 0.86730 0.98982 1.22963 1.01398 0.84260 1.01638 1.66819 1.10289 1.29305 1.15533 1.17935 0.88231 0.80197 1.03549 1.91555 1.83609 1.40657 1.93994 1.21645 1.02327 0.89960 1.04039 1.20286 0.92378 0.96526 0.94790 1.17952 0.92955 0.88963 0.97074 1.21163 1.32231 1.10632 0.92243 0.93023 1.25823 0.95036 0.96455 1.01558 1.70057 1.34561 1.18921 1.33115 0.85534 0.78461 0.77830 0.79451 1.19362 1.20473 1.19376 0.90458 0.91017 0.86651 0.77962 0.82659 0.96520 0.96590 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.82 113.37 1.11 1.31 15 2 O -0.32 -11.60 9.77 -93.11 -0.91 -12.50 15 3 C 0.07 2.54 6.68 22.58 0.15 2.69 15 4 C 0.05 1.69 10.22 84.78 0.87 2.56 15 5 N -0.50 -17.60 10.37 -196.57 -2.04 -19.64 15 6 C 0.25 9.30 8.40 84.73 0.71 10.01 15 7 F -0.12 -4.11 17.29 44.97 0.78 -3.33 15 8 C -0.16 -6.15 9.76 22.40 0.22 -5.93 15 9 C -0.03 -1.37 5.12 -19.59 -0.10 -1.47 15 10 C 0.07 3.51 4.90 29.10 0.14 3.65 15 11 C -0.52 -29.31 9.09 25.60 0.23 -29.08 15 12 H 0.05 2.85 7.74 -2.91 -0.02 2.83 15 13 C 0.01 0.56 5.46 84.65 0.46 1.02 15 14 N -0.93 -54.67 13.29 21.45 0.28 -54.38 15 15 Si 0.96 43.51 29.54 68.60 2.03 45.53 15 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15 19 H 0.08 1.29 7.68 -2.39 -0.02 1.27 15 20 H 0.07 1.30 7.68 -2.39 -0.02 1.28 15 21 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.20 4.40 6.31 -2.91 -0.02 4.38 15 23 H 0.16 5.63 8.06 -2.91 -0.02 5.61 15 24 H 0.02 0.93 7.77 -2.39 -0.02 0.91 15 25 H 0.02 0.86 8.07 -2.39 -0.02 0.84 15 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -65.08 240.78 5.13 -59.95 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.19 Total: -0.39 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 3.80 Total: -15.24 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.75 Total: -74.02 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.91 Total: -12.50 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -65.08 5.13 -59.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057308.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.051 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds