Wall clock time and date at job start Sun Mar 29 2020 22:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35961 * 117.00423 * 2 1 4 4 C 1.38635 * 120.43944 * 359.97438 * 3 2 1 5 5 N 1.31895 * 120.71799 * 179.97438 * 4 3 2 6 6 C 1.32026 * 121.74421 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.58596 * 180.02562 * 6 5 4 8 8 C 1.38510 * 120.81822 * 359.97438 * 6 5 4 9 9 C 1.50703 * 120.39799 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46983 * 279.97440 * 9 8 6 11 11 H 1.08001 * 120.00381 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00380 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99175 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00324 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47161 * 59.99972 * 14 12 10 16 16 H 1.48493 * 109.47057 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47025 * 300.00248 * 14 12 10 18 18 C 1.38492 * 119.20288 * 359.97438 * 8 6 5 19 19 H 1.09001 * 109.46757 * 60.00253 * 1 2 3 20 20 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 21 21 H 1.08990 * 109.46918 * 300.00354 * 1 2 3 22 22 H 1.07997 * 119.64061 * 359.70103 * 4 3 2 23 23 H 1.09000 * 109.47308 * 39.97115 * 9 8 6 24 24 H 1.08999 * 109.47032 * 159.97787 * 9 8 6 25 25 H 0.97005 * 119.99441 * 180.02562 * 13 12 10 26 26 H 1.08001 * 120.79807 * 180.02562 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.3003 2.3799 -0.0005 5 7 1.8935 3.5579 0.0000 6 6 3.2087 3.6734 0.0005 7 9 3.7703 4.9021 0.0015 8 6 4.0196 2.5505 0.0011 9 6 5.5198 2.6934 0.0022 10 6 5.9976 2.9860 -1.3967 11 1 5.2861 3.0615 -2.2057 12 6 7.3431 3.1585 -1.6438 13 7 8.2095 3.0671 -0.6586 14 14 7.9353 3.5220 -3.3778 15 1 7.3178 4.7846 -3.8573 16 1 9.4135 3.6627 -3.3767 17 1 7.5452 2.4072 -4.2779 18 6 3.4352 1.2950 0.0016 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 0.2217 2.3249 -0.0059 23 1 5.8064 3.5118 0.6627 24 1 5.9728 1.7666 0.3544 25 1 9.1561 3.1888 -0.8323 26 1 4.0429 0.4021 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058470.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:43 Heat of formation + Delta-G solvation = -72.998719 kcal Electronic energy + Delta-G solvation = -13440.660555 eV Core-core repulsion = 10819.481584 eV Total energy + Delta-G solvation = -2621.178971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.81814 -41.58674 -39.04428 -35.88276 -33.96885 -31.68047 -29.31612 -28.18578 -25.57250 -24.55040 -22.65480 -19.08149 -18.75025 -18.66314 -18.36709 -17.08730 -16.60003 -16.45748 -15.64490 -15.32420 -14.52843 -14.38636 -14.28181 -13.96384 -13.86853 -13.35673 -12.90905 -12.63370 -12.55474 -12.28337 -11.97538 -11.77643 -10.67863 -10.58043 -10.42289 -9.29226 -8.24426 -6.37305 -0.01922 0.09373 1.39838 1.42782 1.50811 2.18004 2.37618 2.57563 2.71797 3.08382 3.54451 3.68855 3.85463 4.31277 4.39289 4.46952 4.53011 4.81743 4.82799 4.95955 5.22623 5.47991 5.49434 5.66547 6.06137 6.21296 6.58096 6.71694 7.30945 8.85809 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.008437 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.800787 B = 3317.980804 C = 3597.356631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.318 6.318 3 C 0.084 3.916 4 C 0.037 3.963 5 N -0.493 5.493 6 C 0.237 3.763 7 F -0.126 7.126 8 C -0.086 4.086 9 C 0.062 3.938 10 C -0.534 4.534 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.098 4.098 19 H 0.071 0.929 20 H 0.127 0.873 21 H 0.073 0.927 22 H 0.207 0.793 23 H 0.011 0.989 24 H 0.026 0.974 25 H 0.268 0.732 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 -6.042 0.708 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.230 6.230 3 C 0.036 3.964 4 C -0.122 4.122 5 N -0.207 5.207 6 C 0.084 3.916 7 F -0.106 7.106 8 C -0.089 4.089 9 C 0.025 3.975 10 C -0.572 4.572 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.124 4.124 19 H 0.089 0.911 20 H 0.145 0.855 21 H 0.092 0.908 22 H 0.223 0.777 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.906 -5.444 0.756 15.887 hybrid contribution 1.122 0.070 -0.621 1.285 sum -13.784 -5.374 0.135 14.795 Atomic orbital electron populations 1.23545 0.75507 1.06451 1.02972 1.86108 1.24189 1.24505 1.88200 1.19889 0.92265 0.86663 0.97630 1.23073 1.01629 0.84567 1.02893 1.66812 1.09706 1.30233 1.13995 1.17970 0.87971 0.80449 1.05217 1.91529 1.83996 1.41138 1.93911 1.21001 0.99030 0.91944 0.96937 1.18036 0.85041 0.97341 0.97122 1.21201 0.92624 1.49808 0.93570 0.93052 1.25853 0.96722 0.94556 1.01661 1.70050 1.02758 1.50010 1.33553 0.85499 0.77275 0.79100 0.79225 1.19726 1.20197 1.18928 1.20838 0.92567 0.97417 1.01613 0.91084 0.85500 0.90820 0.77688 0.97046 0.95541 0.92307 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 15 2 O -0.32 -7.76 10.51 -93.11 -0.98 -8.74 15 3 C 0.08 2.55 6.71 22.58 0.15 2.70 15 4 C 0.04 1.07 10.22 84.78 0.87 1.94 15 5 N -0.49 -18.80 10.37 -196.58 -2.04 -20.84 15 6 C 0.24 10.58 8.36 84.73 0.71 11.29 15 7 F -0.13 -6.15 16.69 44.97 0.75 -5.40 15 8 C -0.09 -3.87 5.09 -19.74 -0.10 -3.97 15 9 C 0.06 3.33 4.85 29.10 0.14 3.47 15 10 C -0.53 -30.74 9.09 25.60 0.23 -30.51 15 11 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 12 C 0.01 0.64 5.46 84.66 0.46 1.10 15 13 N -0.92 -55.31 13.29 21.45 0.28 -55.03 15 14 Si 0.97 44.47 29.54 68.60 2.03 46.49 15 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 17 H -0.26 -11.64 7.11 99.48 0.71 -10.94 15 18 C -0.10 -3.68 9.77 22.55 0.22 -3.46 15 19 H 0.07 0.77 7.67 -2.39 -0.02 0.75 15 20 H 0.13 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.07 0.75 7.68 -2.39 -0.02 0.73 15 22 H 0.21 3.89 6.31 -2.91 -0.02 3.87 15 23 H 0.01 0.66 7.95 -2.39 -0.02 0.64 15 24 H 0.03 1.44 8.03 -2.39 -0.02 1.42 15 25 H 0.27 15.03 8.31 -92.70 -0.77 14.26 15 26 H 0.15 5.44 8.06 -2.91 -0.02 5.41 15 Total: -1.00 -67.92 240.97 5.03 -62.89 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: 1.19 Total: -3.16 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.79 Total: -16.22 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.75 Total: -75.87 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.98 Total: -8.74 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.75 Total: -5.40 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.92 5.03 -62.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058470.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.112 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds