Wall clock time and date at job start Sun Mar 29 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35957 * 117.00283 * 2 1 4 4 C 1.38964 * 120.48309 * 0.32350 * 3 2 1 5 5 C 1.38655 * 118.40779 * 180.26230 * 4 3 2 6 6 C 1.50698 * 120.36282 * 179.71198 * 5 4 3 7 7 C 1.50702 * 109.47465 * 269.71944 * 6 5 4 8 8 H 1.08002 * 119.99441 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00075 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00481 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99886 * 179.73007 * 9 7 6 12 12 H 1.48502 * 109.46964 * 270.27509 * 11 9 7 13 13 H 1.48505 * 109.47036 * 30.26897 * 11 9 7 14 14 H 1.48490 * 109.47395 * 150.27411 * 11 9 7 15 15 C 1.38136 * 119.27321 * 359.43433 * 5 4 3 16 16 N 1.31933 * 120.90918 * 0.28137 * 15 5 4 17 17 C 1.31980 * 121.74205 * 359.97438 * 16 15 5 18 18 F 1.35107 * 119.68375 * 180.02562 * 17 16 15 19 19 H 1.09003 * 109.47230 * 59.99866 * 1 2 3 20 20 H 1.09003 * 109.47537 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47143 * 300.00302 * 1 2 3 22 22 H 1.08004 * 120.79886 * 359.97438 * 4 3 2 23 23 H 1.09009 * 109.47290 * 149.72315 * 6 5 4 24 24 H 1.08998 * 109.47607 * 29.72740 * 6 5 4 25 25 H 0.97005 * 119.99656 * 359.72741 * 10 9 7 26 26 H 1.07999 * 119.54994 * 180.29701 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2994 2.3832 0.0068 5 6 1.9732 3.5950 0.0009 6 6 1.2070 4.8926 0.0013 7 6 0.9511 5.3255 -1.4194 8 1 1.3074 4.7210 -2.2404 9 6 0.2623 6.4930 -1.6709 10 7 -0.1720 7.2288 -0.6710 11 14 -0.0483 7.0334 -3.4319 12 1 1.0780 7.8835 -3.8947 13 1 -0.1566 5.8370 -4.3050 14 1 -1.3128 7.8091 -3.4959 15 6 3.3545 3.5997 0.0005 16 7 4.0361 2.4701 0.0001 17 6 3.4338 1.2957 0.0005 18 9 4.1729 0.1647 0.0005 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.2198 2.3508 0.0117 23 1 1.7888 5.6580 0.5151 24 1 0.2561 4.7530 0.5155 25 1 -0.0111 6.9480 0.2434 26 1 3.8839 4.5410 0.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058573.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:45 Heat of formation + Delta-G solvation = -58.673756 kcal Electronic energy + Delta-G solvation = -13419.895661 eV Core-core repulsion = 10799.337867 eV Total energy + Delta-G solvation = -2620.557794 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.51354 -40.20300 -38.05596 -34.23522 -31.98497 -30.49793 -27.74325 -26.70414 -23.59315 -22.97032 -21.43797 -17.98689 -17.34868 -17.22207 -16.76911 -16.16896 -15.03287 -14.61182 -14.21725 -13.82479 -13.59516 -13.06557 -12.97220 -12.42122 -11.97256 -11.76538 -11.40659 -11.34940 -10.75388 -10.58851 -10.20024 -9.48812 -9.35337 -8.73183 -8.52518 -7.89246 -6.54304 -4.28047 1.39972 1.47538 3.15922 3.36248 3.38153 3.54423 3.98548 4.03658 4.42386 4.80726 4.93244 5.18075 5.20244 5.28974 5.36531 5.48054 5.66562 6.11477 6.23498 6.44852 6.68862 6.95527 7.16184 7.35810 7.88553 8.02640 8.25395 8.65922 9.43248 10.84868 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.038708 B = 0.008179 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.199007 B = 3422.644016 C = 3704.006934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.057 3.943 4 C -0.146 4.146 5 C -0.045 4.045 6 C 0.039 3.961 7 C -0.600 4.600 8 H 0.052 0.948 9 C 0.021 3.979 10 N -0.906 5.906 11 Si 1.073 2.927 12 H -0.285 1.285 13 H -0.288 1.288 14 H -0.283 1.283 15 C 0.089 3.911 16 N -0.477 5.477 17 C 0.245 3.755 18 F -0.118 7.118 19 H 0.060 0.940 20 H 0.101 0.899 21 H 0.057 0.943 22 H 0.146 0.854 23 H 0.030 0.970 24 H 0.025 0.975 25 H 0.270 0.730 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -9.928 1.537 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.009 3.991 4 C -0.172 4.172 5 C -0.047 4.047 6 C 0.002 3.998 7 C -0.638 4.638 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.542 5.542 11 Si 0.900 3.100 12 H -0.212 1.212 13 H -0.214 1.214 14 H -0.208 1.208 15 C -0.068 4.068 16 N -0.191 5.191 17 C 0.091 3.909 18 F -0.097 7.097 19 H 0.078 0.922 20 H 0.119 0.881 21 H 0.076 0.924 22 H 0.164 0.836 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.939 -8.986 0.620 9.057 hybrid contribution -0.269 -1.342 0.883 1.629 sum 0.670 -10.328 1.503 10.459 Atomic orbital electron populations 1.23114 0.78038 1.03898 1.01943 1.86094 1.21677 1.25532 1.88969 1.19740 0.91420 0.86184 1.01793 1.21567 1.01041 0.90500 1.04126 1.21366 0.94699 0.97278 0.91394 1.18470 0.94394 0.87989 0.98976 1.21875 1.40716 1.10561 0.90613 0.92922 1.25894 0.93267 0.93128 1.06043 1.70778 1.43658 1.39417 1.00302 0.83476 0.77019 0.75855 0.73610 1.21151 1.21402 1.20826 1.22359 0.91285 0.94250 0.98929 1.67026 1.41134 0.97265 1.13658 1.17275 0.83305 0.82737 1.07610 1.91561 1.77431 1.46499 1.94214 0.92163 0.88110 0.92438 0.83640 0.95237 0.95682 0.91939 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.83 101.05 0.99 1.28 15 2 O -0.31 -4.95 10.37 -19.60 -0.20 -5.16 15 3 C 0.06 1.03 6.71 -39.03 -0.26 0.77 15 4 C -0.15 -2.70 8.82 -39.16 -0.35 -3.04 15 5 C -0.05 -0.93 5.08 -104.51 -0.53 -1.46 15 6 C 0.04 0.92 4.44 -29.03 -0.13 0.79 15 7 C -0.60 -15.92 9.09 -34.44 -0.31 -16.23 15 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 15 9 C 0.02 0.58 5.46 -17.82 -0.10 0.48 15 10 N -0.91 -26.01 13.65 55.43 0.76 -25.25 15 11 Si 1.07 24.12 29.90 -169.99 -5.08 19.03 15 12 H -0.29 -6.21 7.11 56.52 0.40 -5.80 15 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 15 C 0.09 1.73 10.85 -17.55 -0.19 1.54 15 16 N -0.48 -9.47 10.37 -13.48 -0.14 -9.61 15 17 C 0.25 4.74 8.43 -17.20 -0.14 4.59 15 18 F -0.12 -2.21 17.14 2.25 0.04 -2.17 15 19 H 0.06 0.68 7.71 -51.93 -0.40 0.28 15 20 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.06 0.61 7.68 -51.93 -0.40 0.21 15 22 H 0.15 2.43 6.45 -52.48 -0.34 2.09 15 23 H 0.03 0.70 7.96 -51.92 -0.41 0.29 15 24 H 0.03 0.60 7.96 -51.93 -0.41 0.19 15 25 H 0.27 7.63 7.22 -40.82 -0.29 7.33 15 26 H 0.17 2.97 8.06 -52.49 -0.42 2.55 15 LS Contribution 240.40 15.07 3.62 3.62 Total: -1.00 -29.60 240.40 -4.33 -33.94 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -2.31 Total: -3.15 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.02 Total: -11.26 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.62 Total: -34.86 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.08 Total: 19.03 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.60 -4.33 -33.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058573.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.735 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds