Wall clock time and date at job start Sun Mar 29 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35957 * 117.00283 * 2 1 4 4 C 1.38964 * 120.48309 * 0.32350 * 3 2 1 5 5 C 1.38655 * 118.40779 * 180.26230 * 4 3 2 6 6 C 1.50698 * 120.36282 * 179.71198 * 5 4 3 7 7 C 1.50702 * 109.47465 * 269.71944 * 6 5 4 8 8 H 1.08002 * 119.99441 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00075 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00481 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99886 * 179.73007 * 9 7 6 12 12 H 1.48502 * 109.46964 * 270.27509 * 11 9 7 13 13 H 1.48505 * 109.47036 * 30.26897 * 11 9 7 14 14 H 1.48490 * 109.47395 * 150.27411 * 11 9 7 15 15 C 1.38136 * 119.27321 * 359.43433 * 5 4 3 16 16 N 1.31933 * 120.90918 * 0.28137 * 15 5 4 17 17 C 1.31980 * 121.74205 * 359.97438 * 16 15 5 18 18 F 1.35107 * 119.68375 * 180.02562 * 17 16 15 19 19 H 1.09003 * 109.47230 * 59.99866 * 1 2 3 20 20 H 1.09003 * 109.47537 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47143 * 300.00302 * 1 2 3 22 22 H 1.08004 * 120.79886 * 359.97438 * 4 3 2 23 23 H 1.09009 * 109.47290 * 149.72315 * 6 5 4 24 24 H 1.08998 * 109.47607 * 29.72740 * 6 5 4 25 25 H 0.97005 * 119.99656 * 359.72741 * 10 9 7 26 26 H 1.07999 * 119.54994 * 180.29701 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2994 2.3832 0.0068 5 6 1.9732 3.5950 0.0009 6 6 1.2070 4.8926 0.0013 7 6 0.9511 5.3255 -1.4194 8 1 1.3074 4.7210 -2.2404 9 6 0.2623 6.4930 -1.6709 10 7 -0.1720 7.2288 -0.6710 11 14 -0.0483 7.0334 -3.4319 12 1 1.0780 7.8835 -3.8947 13 1 -0.1566 5.8370 -4.3050 14 1 -1.3128 7.8091 -3.4959 15 6 3.3545 3.5997 0.0005 16 7 4.0361 2.4701 0.0001 17 6 3.4338 1.2957 0.0005 18 9 4.1729 0.1647 0.0005 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.2198 2.3508 0.0117 23 1 1.7888 5.6580 0.5151 24 1 0.2561 4.7530 0.5155 25 1 -0.0111 6.9480 0.2434 26 1 3.8839 4.5410 0.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058573.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:44 Heat of formation + Delta-G solvation = -77.347350 kcal Electronic energy + Delta-G solvation = -13420.705409 eV Core-core repulsion = 10799.337867 eV Total energy + Delta-G solvation = -2621.367542 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.00529 -41.64218 -39.39035 -36.12541 -33.74105 -31.96521 -29.12986 -28.21239 -25.49571 -24.38044 -23.07110 -19.46738 -18.99310 -18.79579 -18.35246 -17.55364 -16.29206 -15.94484 -15.87526 -15.57899 -15.22968 -14.59930 -14.45931 -13.99640 -13.69410 -13.39797 -12.79500 -12.52098 -12.50921 -12.28433 -11.92454 -11.24992 -10.91968 -10.57041 -10.41739 -9.41513 -8.67230 -6.42529 -0.12605 -0.01316 1.56192 1.62580 1.80836 1.91573 2.43791 2.58479 2.59448 3.14025 3.33729 3.55403 3.90326 4.10382 4.29645 4.31408 4.59923 4.64411 4.71125 4.82993 5.01181 5.27256 5.38695 5.85875 6.02508 6.13474 6.50809 6.54240 7.35967 8.71895 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.038708 B = 0.008179 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.199007 B = 3422.644016 C = 3704.006934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.316 6.316 3 C 0.070 3.930 4 C -0.141 4.141 5 C -0.062 4.062 6 C 0.046 3.954 7 C -0.608 4.608 8 H 0.046 0.954 9 C -0.025 4.025 10 N -0.932 5.932 11 Si 1.115 2.885 12 H -0.274 1.274 13 H -0.273 1.273 14 H -0.282 1.282 15 C 0.087 3.913 16 N -0.487 5.487 17 C 0.235 3.765 18 F -0.116 7.116 19 H 0.062 0.938 20 H 0.135 0.865 21 H 0.068 0.932 22 H 0.163 0.837 23 H 0.020 0.980 24 H 0.017 0.983 25 H 0.261 0.739 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -11.003 0.865 11.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.229 6.229 3 C 0.020 3.980 4 C -0.167 4.167 5 C -0.064 4.064 6 C 0.008 3.992 7 C -0.645 4.645 8 H 0.064 0.936 9 C -0.224 4.224 10 N -0.569 5.569 11 Si 0.937 3.063 12 H -0.199 1.199 13 H -0.198 1.198 14 H -0.207 1.207 15 C -0.070 4.070 16 N -0.201 5.201 17 C 0.081 3.919 18 F -0.095 7.095 19 H 0.081 0.919 20 H 0.153 0.847 21 H 0.086 0.914 22 H 0.180 0.820 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.071 0.929 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.515 -10.085 -0.039 10.099 hybrid contribution -0.155 -1.140 1.137 1.617 sum 0.360 -11.225 1.098 11.285 Atomic orbital electron populations 1.23512 0.75458 1.06456 1.02578 1.86110 1.24212 1.24206 1.88369 1.19618 0.91015 0.86839 1.00488 1.21683 1.01910 0.89894 1.03194 1.21139 0.95002 0.96685 0.93561 1.18258 0.94255 0.89349 0.97315 1.22170 1.40048 1.10388 0.91935 0.93581 1.27208 0.92880 0.93454 1.08871 1.70890 1.45372 1.40307 1.00321 0.82930 0.77229 0.76242 0.69882 1.19934 1.19824 1.20709 1.22447 0.91082 0.94676 0.98811 1.67025 1.41437 0.97511 1.14149 1.17498 0.84067 0.82696 1.07688 1.91561 1.77481 1.46293 1.94183 0.91893 0.84731 0.91372 0.81975 0.96205 0.96431 0.92919 0.80586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.83 113.37 1.11 1.39 15 2 O -0.32 -9.29 10.37 -93.06 -0.97 -10.25 15 3 C 0.07 2.39 6.71 22.63 0.15 2.54 15 4 C -0.14 -4.98 8.82 22.54 0.20 -4.78 15 5 C -0.06 -2.49 5.08 -19.79 -0.10 -2.59 15 6 C 0.05 2.15 4.44 29.10 0.13 2.28 15 7 C -0.61 -32.08 9.09 25.60 0.23 -31.85 15 8 H 0.05 2.45 7.74 -2.91 -0.02 2.43 15 9 C -0.03 -1.36 5.46 84.65 0.46 -0.90 15 10 N -0.93 -53.73 13.65 21.45 0.29 -53.43 15 11 Si 1.12 47.66 29.90 68.60 2.05 49.71 15 12 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 13 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 14 H -0.28 -11.91 7.11 99.48 0.71 -11.21 15 15 C 0.09 3.33 10.85 84.65 0.92 4.25 15 16 N -0.49 -18.89 10.37 -196.56 -2.04 -20.93 15 17 C 0.24 8.76 8.43 84.86 0.72 9.48 15 18 F -0.12 -4.18 17.14 44.97 0.77 -3.41 15 19 H 0.06 1.24 7.71 -2.39 -0.02 1.22 15 20 H 0.13 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.07 1.23 7.68 -2.39 -0.02 1.21 15 22 H 0.16 5.08 6.45 -2.91 -0.02 5.06 15 23 H 0.02 0.96 7.96 -2.38 -0.02 0.94 15 24 H 0.02 0.84 7.96 -2.39 -0.02 0.82 15 25 H 0.26 14.99 7.22 -92.70 -0.67 14.32 15 26 H 0.18 6.25 8.06 -2.91 -0.02 6.23 15 Total: -1.00 -61.55 240.40 5.23 -56.33 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.29 Total: 2.16 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 3.82 Total: -20.17 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.75 Total: -74.36 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.97 Total: -10.25 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.77 Total: -3.41 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.05 Total: 49.71 kcal Total: -61.55 5.23 -56.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058573.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.020 kcal (2) G-P(sol) polarization free energy of solvation -61.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds