Wall clock time and date at job start Sun Mar 29 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48501 * 109.47446 * 270.00450 * 3 2 1 5 5 H 1.48508 * 109.46968 * 30.00507 * 3 2 1 6 6 H 1.48495 * 109.47188 * 150.00056 * 3 2 1 7 7 C 1.37874 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99665 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00214 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47342 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.79277 * 99.99768 * 11 10 9 13 13 C 1.38195 * 119.17975 * 180.02562 * 12 11 10 14 14 N 1.31883 * 120.79006 * 0.02562 * 13 12 11 15 15 C 1.31842 * 121.74130 * 359.97438 * 14 13 12 16 16 C 1.38349 * 120.74297 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 120.43161 * 179.97438 * 16 15 14 18 18 H 0.96995 * 119.99819 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47372 * 59.99469 * 9 7 2 20 20 H 1.08995 * 109.46974 * 299.99523 * 9 7 2 21 21 H 1.09001 * 109.46619 * 59.99726 * 10 9 7 22 22 H 1.08995 * 109.46989 * 299.99872 * 10 9 7 23 23 H 1.08002 * 120.41349 * 0.05045 * 12 11 10 24 24 H 1.07990 * 119.60288 * 179.72771 * 13 12 11 25 25 H 1.08004 * 119.62972 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 6 6.2392 -2.8429 1.1703 13 6 7.6206 -2.8357 1.1309 14 7 8.2626 -2.6352 -0.0035 15 6 7.6209 -2.4355 -1.1378 16 6 6.2380 -2.4301 -1.1764 17 17 5.4012 -2.1658 -2.6743 18 1 -0.4850 0.8400 0.0004 19 1 3.8753 -0.6803 0.8888 20 1 3.8745 -0.6801 -0.8911 21 1 3.6578 -3.1505 -0.8907 22 1 3.6586 -3.1502 0.8892 23 1 5.7198 -3.0077 2.1027 24 1 8.1810 -2.9913 2.0408 25 1 8.1811 -2.2744 -2.0470 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059247.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:52 Heat of formation + Delta-G solvation = -7.621650 kcal Electronic energy + Delta-G solvation = -11389.932441 eV Core-core repulsion = 9199.924807 eV Total energy + Delta-G solvation = -2190.007633 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.22939 -37.60434 -36.40037 -34.49912 -32.05765 -31.71845 -27.59566 -24.48340 -23.95065 -22.04576 -19.07507 -17.78334 -17.58545 -16.83361 -16.39938 -15.30740 -15.07594 -14.80613 -14.73152 -14.11980 -13.44070 -13.20895 -12.98106 -12.79312 -12.22964 -12.13713 -11.88856 -11.68655 -11.41595 -10.77717 -10.53819 -10.40710 -9.91566 -8.30769 -6.34100 -0.03923 0.13887 1.11270 1.33461 1.34203 1.45408 2.33475 2.69152 3.05056 3.49390 3.62937 3.76122 3.98102 4.32246 4.48828 4.60064 4.69744 4.82253 5.00591 5.12734 5.35739 5.53189 5.56531 5.63361 6.25576 6.73046 6.83283 7.30220 8.85882 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.009445 C = 0.008838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.470456 B = 2963.735384 C = 3167.346068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.526 4.526 8 H 0.038 0.962 9 C 0.002 3.998 10 C -0.067 4.067 11 C -0.035 4.035 12 C -0.162 4.162 13 C 0.104 3.896 14 N -0.494 5.494 15 C 0.111 3.889 16 C -0.105 4.105 17 Cl -0.059 7.059 18 H 0.266 0.734 19 H 0.018 0.982 20 H 0.018 0.982 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.163 0.837 24 H 0.197 0.803 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.989 -4.350 0.185 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.564 4.564 8 H 0.057 0.943 9 C -0.035 4.035 10 C -0.104 4.104 11 C -0.043 4.043 12 C -0.181 4.181 13 C -0.052 4.052 14 N -0.204 5.204 15 C -0.047 4.047 16 C -0.133 4.133 17 Cl -0.031 7.031 18 H 0.075 0.925 19 H 0.036 0.964 20 H 0.037 0.963 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.181 0.819 24 H 0.214 0.786 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 16.683 -4.223 0.056 17.209 hybrid contribution -1.428 0.748 -0.312 1.643 sum 15.255 -3.474 -0.256 15.647 Atomic orbital electron populations 1.70046 1.08105 1.28089 1.52671 1.25872 0.95477 1.03040 0.94244 0.85817 0.79599 0.79089 0.79184 1.19408 1.20679 1.17335 1.21392 0.91588 0.93272 1.50188 0.94346 1.19398 0.94109 0.93441 0.96589 1.20511 0.88149 0.98753 1.03027 1.20663 0.97414 0.93649 0.92569 1.22414 0.95761 1.01317 0.98635 1.23394 0.91688 0.93101 0.96975 1.67873 1.40400 1.13049 0.99035 1.23018 0.88853 0.94891 0.97892 1.22193 0.94491 1.07964 0.88701 1.98379 1.78474 1.94755 1.31460 0.92462 0.96404 0.96330 0.91372 0.90336 0.81940 0.78612 0.80120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 15 2 C 0.01 0.63 5.47 84.65 0.46 1.09 15 3 Si 0.94 44.51 27.47 68.60 1.88 46.39 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 6 H -0.25 -11.08 6.54 99.48 0.65 -10.43 15 7 C -0.53 -29.95 9.66 25.60 0.25 -29.71 15 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 15 9 C 0.00 0.10 4.00 29.85 0.12 0.22 15 10 C -0.07 -2.54 4.80 29.85 0.14 -2.40 15 11 C -0.03 -1.09 5.17 -19.65 -0.10 -1.19 15 12 C -0.16 -4.07 9.78 22.36 0.22 -3.85 15 13 C 0.10 2.30 11.18 84.67 0.95 3.25 15 14 N -0.49 -12.65 10.36 -195.75 -2.03 -14.68 15 15 C 0.11 2.88 10.99 84.72 0.93 3.81 15 16 C -0.10 -3.16 6.34 22.41 0.14 -3.02 15 17 Cl -0.06 -1.88 26.94 -2.72 -0.07 -1.95 15 18 H 0.27 15.54 8.31 -92.71 -0.77 14.77 15 19 H 0.02 0.81 7.20 -2.38 -0.02 0.79 15 20 H 0.02 0.86 6.81 -2.39 -0.02 0.84 15 21 H 0.07 2.68 7.46 -2.39 -0.02 2.66 15 22 H 0.08 2.83 8.04 -2.39 -0.02 2.81 15 23 H 0.16 3.36 8.06 -2.91 -0.02 3.34 15 24 H 0.20 2.73 8.06 -2.92 -0.02 2.70 15 25 H 0.18 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -65.70 236.85 4.32 -61.38 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: 1.13 Total: -0.40 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.11 Total: -31.80 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.73 Total: -73.62 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -65.70 4.32 -61.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059247.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.758 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds