Wall clock time and date at job start Sun Mar 29 2020 21:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38164 * 120.42955 * 265.00442 * 11 10 9 13 13 N 1.31883 * 120.77858 * 179.97438 * 12 11 10 14 14 C 1.31912 * 121.75778 * 359.97438 * 13 12 11 15 15 C 1.38127 * 120.77869 * 0.02562 * 14 13 12 16 16 C 1.38780 * 120.42633 * 84.72019 * 11 10 9 17 17 Cl 1.73598 * 120.80222 * 0.02562 * 16 11 10 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08002 * 119.61230 * 359.97438 * 12 11 10 24 24 H 1.07991 * 119.60651 * 180.02562 * 14 13 12 25 25 H 1.07993 * 120.42192 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2320 -5.6247 1.1882 13 7 0.5727 -6.7670 1.1969 14 6 0.1367 -7.3253 0.0841 15 6 0.3583 -6.7269 -1.1409 16 6 1.0444 -5.5212 -1.1901 17 17 1.3410 -4.7283 -2.7057 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.8718 -3.6044 -0.8895 22 1 2.8718 -3.6044 0.8904 23 1 1.5729 -5.1984 2.1201 24 1 -0.3999 -8.2613 0.1316 25 1 -0.0010 -7.1893 -2.0483 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059257.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:54 Heat of formation + Delta-G solvation = 8.237365 kcal Electronic energy + Delta-G solvation = -11324.189350 eV Core-core repulsion = 9134.869415 eV Total energy + Delta-G solvation = -2189.319935 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.97195 -36.37618 -34.45945 -32.39288 -31.59763 -29.20446 -25.35855 -23.33966 -22.54990 -20.41086 -17.12140 -16.48605 -16.36972 -14.81057 -14.52340 -13.94605 -13.55961 -13.22024 -12.89561 -12.35659 -11.88562 -11.80548 -11.26193 -10.94687 -10.70964 -10.48970 -9.98983 -9.83167 -9.36048 -9.15591 -9.09149 -8.48996 -8.36608 -6.01556 -4.04609 1.25374 1.33342 2.31236 3.31337 3.37725 3.40681 3.93576 4.44469 4.61268 4.94054 5.06986 5.24023 5.34530 5.63010 5.81639 5.93642 6.09704 6.51591 6.54936 6.74912 6.97021 7.63417 7.75207 7.96806 8.10365 8.36792 9.01584 9.59442 11.09603 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.043781 B = 0.008261 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.386818 B = 3388.704627 C = 3726.938207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.080 4.080 11 C -0.099 4.099 12 C 0.107 3.893 13 N -0.483 5.483 14 C 0.087 3.913 15 C -0.166 4.166 16 C 0.002 3.998 17 Cl -0.048 7.048 18 H 0.261 0.739 19 H 0.016 0.984 20 H 0.023 0.977 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.163 0.837 24 H 0.158 0.842 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -11.857 -2.312 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.050 4.050 13 N -0.192 5.192 14 C -0.069 4.069 15 C -0.187 4.187 16 C -0.033 4.033 17 Cl -0.018 7.018 18 H 0.070 0.930 19 H 0.035 0.965 20 H 0.041 0.959 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.180 0.820 24 H 0.175 0.825 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.372 -12.088 -1.649 12.277 hybrid contribution 0.486 1.448 -1.034 1.845 sum 1.858 -10.640 -2.683 11.129 Atomic orbital electron populations 1.69968 1.06073 1.26655 1.50584 1.25004 0.94820 0.99223 0.95249 0.86594 0.79853 0.83452 0.78113 1.20674 1.21229 1.19815 1.21187 0.93030 0.90750 1.50928 0.92525 1.19072 0.93562 0.90203 0.97754 1.20897 0.98614 0.90014 1.02306 1.21369 0.98251 0.98574 0.91926 1.22746 0.94510 0.90301 0.97459 1.67623 1.09533 1.10880 1.31134 1.22600 0.97696 0.99548 0.87097 1.22025 1.00886 0.95284 1.00492 1.21260 0.99580 0.94172 0.88259 1.98389 1.94341 1.79766 1.29344 0.92957 0.96531 0.95889 0.91174 0.91436 0.81988 0.82506 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.06 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.79 4.95 -27.88 -0.14 0.65 15 10 C -0.08 -1.62 4.85 -27.89 -0.14 -1.76 15 11 C -0.10 -1.77 5.15 -104.45 -0.54 -2.31 15 12 C 0.11 1.78 10.84 -17.56 -0.19 1.59 15 13 N -0.48 -7.71 10.36 -13.27 -0.14 -7.85 15 14 C 0.09 1.19 11.18 -17.56 -0.20 0.99 15 15 C -0.17 -2.31 9.94 -39.41 -0.39 -2.70 15 16 C 0.00 0.03 6.37 -39.17 -0.25 -0.22 15 17 Cl -0.05 -0.80 27.48 -51.86 -1.42 -2.22 15 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 20 H 0.02 0.62 8.01 -51.93 -0.42 0.21 15 21 H 0.07 1.40 7.25 -51.93 -0.38 1.03 15 22 H 0.07 1.28 8.06 -51.93 -0.42 0.86 15 23 H 0.16 2.41 8.06 -52.49 -0.42 1.99 15 24 H 0.16 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.14 1.52 8.06 -52.49 -0.42 1.10 15 LS Contribution 241.52 15.07 3.64 3.64 Total: -1.00 -30.36 241.52 -6.90 -37.26 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -2.44 Total: -4.28 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.25 Total: -16.98 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.60 Total: -33.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.22 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.36 -6.90 -37.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059257.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.500 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds