Wall clock time and date at job start Sun Mar 29 2020 21:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38164 * 120.42955 * 265.00442 * 11 10 9 13 13 N 1.31883 * 120.77858 * 179.97438 * 12 11 10 14 14 C 1.31912 * 121.75778 * 359.97438 * 13 12 11 15 15 C 1.38127 * 120.77869 * 0.02562 * 14 13 12 16 16 C 1.38780 * 120.42633 * 84.72019 * 11 10 9 17 17 Cl 1.73598 * 120.80222 * 0.02562 * 16 11 10 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08002 * 119.61230 * 359.97438 * 12 11 10 24 24 H 1.07991 * 119.60651 * 180.02562 * 14 13 12 25 25 H 1.07993 * 120.42192 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2320 -5.6247 1.1882 13 7 0.5727 -6.7670 1.1969 14 6 0.1367 -7.3253 0.0841 15 6 0.3583 -6.7269 -1.1409 16 6 1.0444 -5.5212 -1.1901 17 17 1.3410 -4.7283 -2.7057 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.8718 -3.6044 -0.8895 22 1 2.8718 -3.6044 0.8904 23 1 1.5729 -5.1984 2.1201 24 1 -0.3999 -8.2613 0.1316 25 1 -0.0010 -7.1893 -2.0483 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059257.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:53 Heat of formation + Delta-G solvation = -9.763412 kcal Electronic energy + Delta-G solvation = -11324.969922 eV Core-core repulsion = 9134.869415 eV Total energy + Delta-G solvation = -2190.100507 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.20275 -37.67125 -36.21052 -34.26616 -32.81948 -30.90247 -27.17070 -24.56756 -24.20264 -22.06575 -18.59946 -18.21434 -17.74662 -16.53728 -16.06126 -15.26548 -14.80743 -14.66580 -14.60855 -14.18353 -13.42084 -13.21024 -12.98782 -12.81196 -12.51467 -11.88781 -11.81832 -11.72030 -11.23620 -10.56922 -10.50997 -10.36593 -9.87942 -8.18518 -6.29463 0.04165 0.09160 1.03383 1.41438 1.42214 1.53344 2.41849 2.72789 3.15357 3.49588 3.78412 3.82205 3.99792 4.44051 4.49618 4.77256 4.80074 4.80539 5.08392 5.13901 5.50558 5.61163 5.72249 5.84609 6.23294 6.86690 6.91070 7.39642 8.93206 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.043781 B = 0.008261 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.386818 B = 3388.704627 C = 3726.938207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.039 3.961 10 C -0.065 4.065 11 C -0.125 4.125 12 C 0.102 3.898 13 N -0.497 5.497 14 C 0.098 3.902 15 C -0.159 4.159 16 C -0.011 4.011 17 Cl -0.056 7.056 18 H 0.263 0.737 19 H -0.011 1.011 20 H -0.003 1.003 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.171 0.829 24 H 0.202 0.798 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -12.849 -2.450 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.002 3.998 10 C -0.103 4.103 11 C -0.128 4.128 12 C -0.054 4.054 13 N -0.206 5.206 14 C -0.059 4.059 15 C -0.179 4.179 16 C -0.046 4.046 17 Cl -0.027 7.027 18 H 0.071 0.929 19 H 0.007 0.993 20 H 0.016 0.984 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.188 0.812 24 H 0.218 0.782 25 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.790 -13.089 -1.783 13.330 hybrid contribution 0.298 1.637 -1.006 1.945 sum 2.088 -11.451 -2.789 11.969 Atomic orbital electron populations 1.70105 1.07840 1.27682 1.51761 1.25933 0.95668 1.03221 0.94777 0.85484 0.78803 0.78601 0.78395 1.19993 1.20924 1.18490 1.21655 0.93617 0.92021 1.50388 0.91863 1.18873 0.93882 0.91940 0.95071 1.20565 0.97538 0.89575 1.02642 1.21175 1.00109 0.98294 0.93239 1.22875 0.94559 0.90668 0.97348 1.67709 1.09889 1.10613 1.32351 1.23370 0.96027 1.00315 0.86149 1.22413 0.99389 0.93904 1.02156 1.21529 1.00196 0.95266 0.87581 1.98383 1.94461 1.80178 1.29683 0.92862 0.99306 0.98432 0.91335 0.90544 0.81199 0.78180 0.81009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 15 2 C 0.00 0.10 5.46 84.66 0.46 0.56 15 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 15 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 7 C -0.54 -30.32 9.11 25.60 0.23 -30.08 15 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.04 2.06 4.95 29.85 0.15 2.21 15 10 C -0.07 -2.66 4.85 29.85 0.14 -2.52 15 11 C -0.13 -4.48 5.15 -19.75 -0.10 -4.58 15 12 C 0.10 3.31 10.84 84.67 0.92 4.23 15 13 N -0.50 -14.82 10.36 -195.90 -2.03 -16.85 15 14 C 0.10 2.34 11.18 84.65 0.95 3.28 15 15 C -0.16 -3.95 9.94 22.38 0.22 -3.73 15 16 C -0.01 -0.36 6.37 22.54 0.14 -0.21 15 17 Cl -0.06 -1.87 27.48 -2.72 -0.07 -1.94 15 18 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 19 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 15 20 H 0.00 -0.15 8.01 -2.39 -0.02 -0.17 15 21 H 0.07 2.77 7.25 -2.39 -0.02 2.75 15 22 H 0.08 2.91 8.06 -2.39 -0.02 2.89 15 23 H 0.17 5.02 8.06 -2.91 -0.02 4.99 15 24 H 0.20 2.95 8.06 -2.92 -0.02 2.92 15 25 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 Total: -1.00 -65.48 241.52 4.51 -60.98 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: 1.18 Total: -0.77 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 3.12 Total: -30.85 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.74 Total: -73.60 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -65.48 4.51 -60.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059257.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.213 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds