Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99722 * 2 1 4 4 H 1.08994 * 109.64253 * 30.42082 * 3 2 1 5 5 C 1.53025 * 109.63749 * 269.99426 * 3 2 1 6 6 C 1.50066 * 110.14518 * 190.88116 * 5 3 2 7 7 C 1.29442 * 124.07638 * 17.13412 * 6 5 3 8 8 C 1.50698 * 117.96493 * 179.52984 * 7 6 5 9 9 C 1.53008 * 109.47228 * 94.97695 * 8 7 6 10 10 C 1.50698 * 109.47228 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00065 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99954 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00274 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47071 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46936 * 119.99906 * 14 12 10 17 17 H 1.48491 * 109.47289 * 239.99974 * 14 12 10 18 18 C 1.50066 * 124.07589 * 359.50552 * 7 6 5 19 19 C 1.53029 * 110.14599 * 17.15483 * 18 7 6 20 20 H 1.09004 * 109.47083 * 59.99862 * 1 2 3 21 21 H 1.08994 * 109.47239 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47330 * 300.00556 * 1 2 3 23 23 H 1.08999 * 109.35479 * 70.67646 * 5 3 2 24 24 H 1.08992 * 109.24763 * 311.02161 * 5 3 2 25 25 H 1.08000 * 117.96446 * 197.11180 * 6 5 3 26 26 H 1.08997 * 109.47550 * 214.97688 * 8 7 6 27 27 H 1.08998 * 109.46871 * 334.98121 * 8 7 6 28 28 H 1.08997 * 109.46849 * 300.00422 * 9 8 7 29 29 H 1.09007 * 109.46626 * 60.00426 * 9 8 7 30 30 H 0.96996 * 120.00040 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.35786 * 137.35981 * 18 7 6 32 32 H 1.08994 * 109.36458 * 256.94815 * 18 7 6 33 33 H 1.09000 * 109.64166 * 70.24497 * 19 18 7 34 34 H 1.08995 * 109.64046 * 190.87354 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3505 2.0003 0.5198 5 6 2.2195 1.7753 -1.4412 6 6 3.0630 3.0163 -1.4630 7 6 3.7933 3.4143 -0.4712 8 6 4.5957 4.6778 -0.6468 9 6 3.8082 5.8641 -0.0867 10 6 4.6109 7.1274 -0.2617 11 1 5.5851 7.0883 -0.7264 12 6 4.1017 8.3333 0.1712 13 7 2.9156 8.3809 0.7375 14 14 5.0963 9.8994 -0.0463 15 1 6.3872 9.5783 -0.7064 16 1 4.3348 10.8564 -0.8887 17 1 5.3574 10.5087 1.2824 18 6 3.8902 2.6962 0.8430 19 6 3.3745 1.2626 0.6995 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.2520 1.9881 -1.8959 24 1 2.7192 0.9888 -2.0065 25 1 3.0610 3.6143 -2.3623 26 1 5.5414 4.5848 -0.1127 27 1 4.7914 4.8395 -1.7068 28 1 2.8626 5.9570 -0.6207 29 1 3.6126 5.7023 0.9734 30 1 2.5572 9.2293 1.0417 31 1 4.9306 2.6752 1.1674 32 1 3.2924 3.2223 1.5872 33 1 4.0748 0.6795 0.1013 34 1 3.2666 0.8117 1.6859 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = -62.646016 kcal Electronic energy + Delta-G solvation = -13741.268667 eV Core-core repulsion = 11445.257933 eV Total energy + Delta-G solvation = -2296.010733 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13448 -36.76159 -33.62336 -31.76941 -30.51302 -28.59004 -26.55096 -24.52076 -22.96424 -21.71624 -20.47572 -17.42217 -16.60048 -16.32537 -15.28110 -14.87492 -14.45920 -14.26122 -13.49713 -13.29924 -13.02380 -12.51610 -12.34713 -11.98558 -11.84721 -11.64001 -11.14531 -10.95276 -10.77170 -10.70859 -10.46790 -10.26483 -9.74372 -9.54228 -9.38235 -9.02646 -8.34481 -8.09215 -5.99259 -4.01824 2.80495 3.31185 3.38631 3.43053 3.77676 4.46739 4.91738 4.95531 5.21433 5.30073 5.34743 5.36471 5.49195 5.55636 5.62955 5.67169 5.79158 5.94817 6.03505 6.10588 6.18441 6.41748 6.44313 6.56398 6.73897 6.98415 7.20927 7.27885 7.54821 7.69942 7.87598 8.01688 8.43374 9.05763 9.62284 11.11937 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.059740 B = 0.005742 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.585691 B = 4874.766679 C = 4994.206983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.086 3.914 4 H 0.064 0.936 5 C -0.100 4.100 6 C -0.185 4.185 7 C -0.097 4.097 8 C -0.085 4.085 9 C 0.029 3.971 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.082 4.082 19 C -0.111 4.111 20 H 0.040 0.960 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -14.003 -1.145 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.029 3.971 4 H 0.083 0.917 5 C -0.137 4.137 6 C -0.203 4.203 7 C -0.097 4.097 8 C -0.122 4.122 9 C -0.008 4.008 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.119 4.119 19 C -0.149 4.149 20 H 0.059 0.941 21 H 0.100 0.900 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.598 -14.040 -1.071 14.318 hybrid contribution 0.149 1.296 -0.156 1.313 sum -2.449 -12.744 -1.227 13.035 Atomic orbital electron populations 1.22749 0.81529 1.02231 1.00062 1.87874 1.19333 1.28486 1.95135 1.22269 0.95058 0.83762 0.96007 0.91744 1.20801 0.99517 0.96607 0.96814 1.21618 1.00672 0.98161 0.99880 1.21175 0.97508 0.96645 0.94358 1.20942 0.97929 0.92659 1.00719 1.19060 0.95097 0.90477 0.96146 1.21330 1.03299 0.92307 1.38946 0.92625 1.25024 0.95019 0.99127 0.95279 1.69980 1.16973 1.25768 1.40814 0.86549 0.80305 0.83449 0.77791 1.19719 1.21031 1.21008 1.20411 1.01911 0.93401 0.96164 1.21653 0.95231 0.97458 1.00553 0.94112 0.90015 0.94107 0.91788 0.90834 0.87773 0.92717 0.92752 0.96603 0.96580 0.93087 0.90516 0.90410 0.91252 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.83 101.05 1.09 1.42 16 2 O -0.39 -5.30 10.37 -35.23 -0.37 -5.66 16 3 C 0.09 1.22 2.66 -26.52 -0.07 1.15 16 4 H 0.06 0.93 7.79 -51.93 -0.40 0.53 16 5 C -0.10 -1.44 5.74 -28.18 -0.16 -1.60 16 6 C -0.19 -3.13 9.37 -35.90 -0.34 -3.46 16 7 C -0.10 -1.75 5.09 -100.94 -0.51 -2.26 16 8 C -0.09 -1.80 5.16 -27.88 -0.14 -1.94 16 9 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 10 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.08 -1.28 5.80 -28.17 -0.16 -1.45 16 19 C -0.11 -1.53 5.67 -26.52 -0.15 -1.68 16 20 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.10 1.79 7.75 -52.49 -0.41 1.39 16 26 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 27 H 0.05 1.14 7.80 -51.93 -0.41 0.73 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -30.47 281.30 -7.23 -37.70 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.82 Total: -3.70 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -1.00 Total: -22.89 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.37 Total: -5.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.47 -7.23 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.948 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds