Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99722 * 2 1 4 4 H 1.08994 * 109.64253 * 30.42082 * 3 2 1 5 5 C 1.53025 * 109.63749 * 269.99426 * 3 2 1 6 6 C 1.50066 * 110.14518 * 190.88116 * 5 3 2 7 7 C 1.29442 * 124.07638 * 17.13412 * 6 5 3 8 8 C 1.50698 * 117.96493 * 179.52984 * 7 6 5 9 9 C 1.53008 * 109.47228 * 94.97695 * 8 7 6 10 10 C 1.50698 * 109.47228 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00065 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99954 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00274 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47071 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46936 * 119.99906 * 14 12 10 17 17 H 1.48491 * 109.47289 * 239.99974 * 14 12 10 18 18 C 1.50066 * 124.07589 * 359.50552 * 7 6 5 19 19 C 1.53029 * 110.14599 * 17.15483 * 18 7 6 20 20 H 1.09004 * 109.47083 * 59.99862 * 1 2 3 21 21 H 1.08994 * 109.47239 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47330 * 300.00556 * 1 2 3 23 23 H 1.08999 * 109.35479 * 70.67646 * 5 3 2 24 24 H 1.08992 * 109.24763 * 311.02161 * 5 3 2 25 25 H 1.08000 * 117.96446 * 197.11180 * 6 5 3 26 26 H 1.08997 * 109.47550 * 214.97688 * 8 7 6 27 27 H 1.08998 * 109.46871 * 334.98121 * 8 7 6 28 28 H 1.08997 * 109.46849 * 300.00422 * 9 8 7 29 29 H 1.09007 * 109.46626 * 60.00426 * 9 8 7 30 30 H 0.96996 * 120.00040 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.35786 * 137.35981 * 18 7 6 32 32 H 1.08994 * 109.36458 * 256.94815 * 18 7 6 33 33 H 1.09000 * 109.64166 * 70.24497 * 19 18 7 34 34 H 1.08995 * 109.64046 * 190.87354 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3505 2.0003 0.5198 5 6 2.2195 1.7753 -1.4412 6 6 3.0630 3.0163 -1.4630 7 6 3.7933 3.4143 -0.4712 8 6 4.5957 4.6778 -0.6468 9 6 3.8082 5.8641 -0.0867 10 6 4.6109 7.1274 -0.2617 11 1 5.5851 7.0883 -0.7264 12 6 4.1017 8.3333 0.1712 13 7 2.9156 8.3809 0.7375 14 14 5.0963 9.8994 -0.0463 15 1 6.3872 9.5783 -0.7064 16 1 4.3348 10.8564 -0.8887 17 1 5.3574 10.5087 1.2824 18 6 3.8902 2.6962 0.8430 19 6 3.3745 1.2626 0.6995 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.2520 1.9881 -1.8959 24 1 2.7192 0.9888 -2.0065 25 1 3.0610 3.6143 -2.3623 26 1 5.5414 4.5848 -0.1127 27 1 4.7914 4.8395 -1.7068 28 1 2.8626 5.9570 -0.6207 29 1 3.6126 5.7023 0.9734 30 1 2.5572 9.2293 1.0417 31 1 4.9306 2.6752 1.1674 32 1 3.2924 3.2223 1.5872 33 1 4.0748 0.6795 0.1013 34 1 3.2666 0.8117 1.6859 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = -79.961989 kcal Electronic energy + Delta-G solvation = -13742.019544 eV Core-core repulsion = 11445.257933 eV Total energy + Delta-G solvation = -2296.761610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.30575 -37.98746 -35.55521 -33.53580 -31.75158 -30.22735 -27.62991 -26.30504 -24.19587 -23.28771 -22.04918 -18.76434 -18.47326 -17.63277 -16.54232 -16.33353 -16.00301 -15.55859 -15.02188 -14.57297 -14.38114 -14.16598 -13.76090 -13.42067 -13.22545 -13.20790 -12.81710 -12.55093 -12.39436 -12.02243 -11.90482 -11.58489 -11.56204 -11.44042 -10.98935 -10.56930 -10.43778 -9.55145 -8.20936 -6.32844 1.37904 1.39576 1.40996 1.53534 2.40529 2.79157 3.11884 3.74116 3.81283 4.03892 4.19753 4.37995 4.43136 4.52416 4.53918 4.60573 4.66982 4.76095 4.87243 4.88802 4.91985 4.98427 5.04807 5.14851 5.23660 5.28572 5.49344 5.66079 5.75840 5.83856 6.21249 6.23963 6.27997 6.84482 7.36765 8.90844 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.059740 B = 0.005742 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.585691 B = 4874.766679 C = 4994.206983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.088 3.912 4 H 0.056 0.944 5 C -0.097 4.097 6 C -0.173 4.173 7 C -0.118 4.118 8 C -0.074 4.074 9 C 0.036 3.964 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.079 4.079 19 C -0.105 4.105 20 H 0.045 0.955 21 H 0.103 0.897 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.053 0.947 28 H -0.014 1.014 29 H -0.008 1.008 30 H 0.264 0.736 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -14.690 -1.495 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.030 3.970 4 H 0.074 0.926 5 C -0.134 4.134 6 C -0.192 4.192 7 C -0.118 4.118 8 C -0.111 4.111 9 C -0.001 4.001 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.202 1.202 18 C -0.116 4.116 19 C -0.142 4.142 20 H 0.064 0.936 21 H 0.121 0.879 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.005 0.995 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.147 -14.744 -1.427 14.968 hybrid contribution -0.061 1.484 -0.080 1.487 sum -2.209 -13.260 -1.506 13.527 Atomic orbital electron populations 1.22974 0.79949 1.03865 1.00524 1.87852 1.21073 1.27778 1.95174 1.22186 0.95198 0.84096 0.95535 0.92555 1.20809 0.99545 0.95508 0.97565 1.21824 0.99597 0.98683 0.99056 1.21122 0.98374 0.96102 0.96159 1.20726 0.97869 0.92340 1.00191 1.18909 0.94326 0.92348 0.94484 1.21767 1.03784 0.93585 1.39137 0.92174 1.25989 0.96122 1.02986 0.94679 1.70110 1.18738 1.26964 1.41629 0.85386 0.78920 0.78612 0.78058 1.18547 1.20369 1.20227 1.20379 1.02412 0.94361 0.94407 1.21594 0.95127 0.95956 1.01521 0.93623 0.87859 0.93711 0.90742 0.89563 0.88503 0.92244 0.92844 0.99540 0.98929 0.92756 0.89668 0.91702 0.90578 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.83 113.37 1.23 1.66 16 2 O -0.40 -9.98 10.37 -148.98 -1.54 -11.52 16 3 C 0.09 2.32 2.66 30.73 0.08 2.41 16 4 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 5 C -0.10 -2.62 5.74 29.66 0.17 -2.45 16 6 C -0.17 -5.74 9.37 27.04 0.25 -5.49 16 7 C -0.12 -4.23 5.09 -15.10 -0.08 -4.31 16 8 C -0.07 -3.16 5.16 29.85 0.15 -3.01 16 9 C 0.04 1.97 4.96 29.85 0.15 2.12 16 10 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 12 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 13 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 14 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 C -0.08 -2.42 5.80 29.66 0.17 -2.25 16 19 C -0.10 -2.69 5.67 30.73 0.17 -2.52 16 20 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 21 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.04 0.80 8.09 -2.39 -0.02 0.78 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.10 3.31 7.75 -2.91 -0.02 3.29 16 26 H 0.06 2.44 8.09 -2.39 -0.02 2.42 16 27 H 0.05 2.25 7.80 -2.39 -0.02 2.23 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -64.87 281.30 4.80 -60.07 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.04 Total: 6.88 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 3.00 Total: -44.79 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.28 Total: -57.34 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -1.54 Total: -11.52 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.87 4.80 -60.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.889 kcal (2) G-P(sol) polarization free energy of solvation -64.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds