Wall clock time and date at job start Sun Mar 29 2020 21:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00258 * 2 1 4 4 H 1.09003 * 109.80870 * 330.52807 * 3 2 1 5 5 C 1.53016 * 109.64270 * 91.05759 * 3 2 1 6 6 C 1.50074 * 110.14671 * 169.12170 * 5 3 2 7 7 C 1.29445 * 124.07477 * 342.87319 * 6 5 3 8 8 C 1.50701 * 117.95895 * 180.75080 * 7 6 5 9 9 C 1.53004 * 109.47135 * 94.73163 * 8 7 6 10 10 C 1.50696 * 109.46784 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00376 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99849 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00399 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99893 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46933 * 90.00687 * 14 12 10 16 16 H 1.48508 * 109.47195 * 210.00094 * 14 12 10 17 17 H 1.48499 * 109.47101 * 330.00426 * 14 12 10 18 18 C 1.50066 * 124.07462 * 0.46305 * 7 6 5 19 19 C 1.53022 * 110.14786 * 342.87404 * 18 7 6 20 20 H 1.08995 * 109.47130 * 59.99812 * 1 2 3 21 21 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99777 * 1 2 3 23 23 H 1.09002 * 109.36083 * 289.32800 * 5 3 2 24 24 H 1.08998 * 109.35894 * 49.05628 * 5 3 2 25 25 H 1.07999 * 117.96347 * 162.89380 * 6 5 3 26 26 H 1.08999 * 109.47204 * 214.73222 * 8 7 6 27 27 H 1.08997 * 109.47356 * 334.73326 * 8 7 6 28 28 H 1.08992 * 109.47431 * 299.99837 * 9 8 7 29 29 H 1.09006 * 109.46649 * 59.99890 * 9 8 7 30 30 H 0.96996 * 120.00278 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.35468 * 103.08075 * 18 7 6 32 32 H 1.08998 * 109.35916 * 222.80188 * 18 7 6 33 33 H 1.09001 * 109.63686 * 169.12112 * 19 18 7 34 34 H 1.08996 * 109.63982 * 289.53395 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 2.0060 -0.5046 5 6 2.2438 1.7645 1.4409 6 6 3.0878 3.0053 1.4577 7 6 3.8012 3.4108 0.4566 8 6 4.6116 4.6694 0.6303 9 6 6.0362 4.3045 1.0526 10 6 6.8467 5.5631 1.2257 11 1 6.3913 6.5269 1.0523 12 6 8.1698 5.4842 1.6054 13 7 8.8771 6.5826 1.7570 14 14 8.9575 3.8172 1.9060 15 1 9.5488 3.3137 0.6403 16 1 10.0234 3.9510 2.9314 17 1 7.9265 2.8619 2.3853 18 6 3.8763 2.7021 -0.8641 19 6 3.3629 1.2676 -0.7224 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.2842 1.9739 1.9135 24 1 2.7541 0.9755 1.9933 25 1 3.1010 3.5966 2.3613 26 1 4.6408 5.2158 -0.3124 27 1 4.1538 5.2933 1.3978 28 1 6.0071 3.7582 1.9953 29 1 6.4941 3.6805 0.2850 30 1 9.8078 6.5271 2.0245 31 1 3.2662 3.2337 -1.5945 32 1 4.9115 2.6813 -1.2047 33 1 3.2385 0.8238 -1.7102 34 1 4.0747 0.6792 -0.1435 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:47 Heat of formation + Delta-G solvation = -58.884393 kcal Electronic energy + Delta-G solvation = -13787.803976 eV Core-core repulsion = 11491.956358 eV Total energy + Delta-G solvation = -2295.847617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.24528 -36.88968 -33.66548 -31.87732 -30.63042 -29.00274 -26.72087 -24.62505 -23.05229 -21.71643 -20.21887 -17.66193 -16.85777 -16.57587 -15.38662 -15.00204 -14.26233 -14.21384 -13.68878 -13.43906 -13.10988 -12.70826 -12.52816 -12.19416 -12.01566 -11.73273 -11.43932 -11.06852 -10.88210 -10.59940 -10.52321 -10.07923 -9.80016 -9.62159 -9.45322 -9.13968 -8.52027 -8.24646 -6.02771 -4.00686 2.67363 3.32563 3.40014 3.45394 3.67872 4.47415 4.81461 4.84547 5.09316 5.18200 5.22276 5.31630 5.38034 5.44356 5.51376 5.55146 5.66485 5.85137 5.94268 6.02331 6.13321 6.28656 6.32595 6.42246 6.56337 6.80339 7.07329 7.16638 7.31376 7.33609 7.59370 7.81723 8.55564 9.02122 9.60099 11.10731 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057207 B = 0.006297 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.330994 B = 4445.193703 C = 4591.170444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.089 3.911 4 H 0.062 0.938 5 C -0.102 4.102 6 C -0.182 4.182 7 C -0.103 4.103 8 C -0.076 4.076 9 C -0.006 4.006 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.066 3.934 13 N -0.905 5.905 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.083 4.083 19 C -0.115 4.115 20 H 0.039 0.961 21 H 0.082 0.918 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.016 0.984 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.944 -11.529 -3.880 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.031 3.969 4 H 0.080 0.920 5 C -0.140 4.140 6 C -0.200 4.200 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.043 4.043 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.544 5.544 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.120 4.120 19 C -0.152 4.152 20 H 0.058 0.942 21 H 0.101 0.899 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.651 -11.620 -3.825 19.087 hybrid contribution 0.371 -0.490 0.313 0.689 sum -14.281 -12.110 -3.512 19.051 Atomic orbital electron populations 1.22750 0.81568 1.02360 0.99862 1.87904 1.19274 1.28369 1.95094 1.22237 0.94951 0.83797 0.95878 0.91984 1.20826 0.99399 0.96869 0.96859 1.21679 1.00765 0.98358 0.99171 1.21216 0.96316 0.98032 0.94769 1.20728 0.96501 0.92952 1.01170 1.19525 0.91450 0.97375 0.95950 1.21180 0.95406 0.93095 1.46220 0.91054 1.25021 0.97223 0.96371 0.94827 1.69917 1.08838 1.27400 1.48241 0.86793 0.79218 0.85121 0.78298 1.20271 1.21395 1.18923 1.20418 1.02301 0.93582 0.95650 1.21679 0.95438 0.97544 1.00567 0.94217 0.89940 0.94157 0.91782 0.90549 0.87611 0.92171 0.92176 0.96584 0.97050 0.92764 0.90957 0.89895 0.91264 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.83 101.05 1.09 1.38 16 2 O -0.39 -4.96 10.36 -35.23 -0.37 -5.32 16 3 C 0.09 1.14 2.66 -26.52 -0.07 1.07 16 4 H 0.06 0.74 7.78 -51.93 -0.40 0.34 16 5 C -0.10 -1.38 5.76 -28.18 -0.16 -1.54 16 6 C -0.18 -2.87 9.37 -35.90 -0.34 -3.21 16 7 C -0.10 -1.75 5.09 -100.94 -0.51 -2.26 16 8 C -0.08 -1.54 5.16 -27.88 -0.14 -1.68 16 9 C -0.01 -0.14 4.02 -27.88 -0.11 -0.25 16 10 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 14 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 18 C -0.08 -1.20 5.80 -28.18 -0.16 -1.37 16 19 C -0.11 -1.53 5.67 -26.52 -0.15 -1.68 16 20 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.11 1.70 7.74 -52.49 -0.41 1.30 16 26 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 27 H 0.06 1.21 7.80 -51.93 -0.40 0.81 16 28 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 29 H 0.01 0.27 7.54 -51.93 -0.39 -0.12 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 LS Contribution 277.70 15.07 4.18 4.18 Total: -1.00 -31.10 277.70 -6.85 -37.95 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.79 Total: -3.70 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -0.99 Total: -23.09 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.77 Total: -27.50 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.37 Total: -5.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.10 -6.85 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.936 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds