Wall clock time and date at job start Sun Mar 29 2020 21:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00258 * 2 1 4 4 H 1.09003 * 109.80870 * 330.52807 * 3 2 1 5 5 C 1.53016 * 109.64270 * 91.05759 * 3 2 1 6 6 C 1.50074 * 110.14671 * 169.12170 * 5 3 2 7 7 C 1.29445 * 124.07477 * 342.87319 * 6 5 3 8 8 C 1.50701 * 117.95895 * 180.75080 * 7 6 5 9 9 C 1.53004 * 109.47135 * 94.73163 * 8 7 6 10 10 C 1.50696 * 109.46784 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00376 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99849 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00399 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99893 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46933 * 90.00687 * 14 12 10 16 16 H 1.48508 * 109.47195 * 210.00094 * 14 12 10 17 17 H 1.48499 * 109.47101 * 330.00426 * 14 12 10 18 18 C 1.50066 * 124.07462 * 0.46305 * 7 6 5 19 19 C 1.53022 * 110.14786 * 342.87404 * 18 7 6 20 20 H 1.08995 * 109.47130 * 59.99812 * 1 2 3 21 21 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99777 * 1 2 3 23 23 H 1.09002 * 109.36083 * 289.32800 * 5 3 2 24 24 H 1.08998 * 109.35894 * 49.05628 * 5 3 2 25 25 H 1.07999 * 117.96347 * 162.89380 * 6 5 3 26 26 H 1.08999 * 109.47204 * 214.73222 * 8 7 6 27 27 H 1.08997 * 109.47356 * 334.73326 * 8 7 6 28 28 H 1.08992 * 109.47431 * 299.99837 * 9 8 7 29 29 H 1.09006 * 109.46649 * 59.99890 * 9 8 7 30 30 H 0.96996 * 120.00278 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.35468 * 103.08075 * 18 7 6 32 32 H 1.08998 * 109.35916 * 222.80188 * 18 7 6 33 33 H 1.09001 * 109.63686 * 169.12112 * 19 18 7 34 34 H 1.08996 * 109.63982 * 289.53395 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 2.0060 -0.5046 5 6 2.2438 1.7645 1.4409 6 6 3.0878 3.0053 1.4577 7 6 3.8012 3.4108 0.4566 8 6 4.6116 4.6694 0.6303 9 6 6.0362 4.3045 1.0526 10 6 6.8467 5.5631 1.2257 11 1 6.3913 6.5269 1.0523 12 6 8.1698 5.4842 1.6054 13 7 8.8771 6.5826 1.7570 14 14 8.9575 3.8172 1.9060 15 1 9.5488 3.3137 0.6403 16 1 10.0234 3.9510 2.9314 17 1 7.9265 2.8619 2.3853 18 6 3.8763 2.7021 -0.8641 19 6 3.3629 1.2676 -0.7224 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.2842 1.9739 1.9135 24 1 2.7541 0.9755 1.9933 25 1 3.1010 3.5966 2.3613 26 1 4.6408 5.2158 -0.3124 27 1 4.1538 5.2933 1.3978 28 1 6.0071 3.7582 1.9953 29 1 6.4941 3.6805 0.2850 30 1 9.8078 6.5271 2.0245 31 1 3.2662 3.2337 -1.5945 32 1 4.9115 2.6813 -1.2047 33 1 3.2385 0.8238 -1.7102 34 1 4.0747 0.6792 -0.1435 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:47 Heat of formation + Delta-G solvation = -77.509220 kcal Electronic energy + Delta-G solvation = -13788.611609 eV Core-core repulsion = 11491.956358 eV Total energy + Delta-G solvation = -2296.655250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.30828 -38.00869 -35.52020 -33.70762 -31.77284 -30.55504 -27.67386 -26.25345 -24.17221 -23.14323 -21.83646 -19.17320 -18.57306 -17.63653 -16.40794 -16.31786 -15.98571 -15.45396 -15.13331 -14.70603 -14.61642 -14.13373 -13.86509 -13.61725 -13.22618 -13.16972 -12.77691 -12.71938 -12.18914 -11.93695 -11.82159 -11.60575 -11.54424 -11.44414 -11.10634 -10.77757 -10.41394 -9.57746 -8.31289 -6.35390 1.33896 1.35427 1.38086 1.48464 2.34619 2.81933 3.04080 3.74657 3.81778 4.02299 4.19274 4.36438 4.41609 4.51201 4.55746 4.59632 4.62485 4.75385 4.80763 4.88825 4.92083 4.99440 5.00514 5.07791 5.22265 5.29039 5.43943 5.49253 5.62155 5.78668 6.20184 6.27226 6.31220 6.72463 7.29556 8.85611 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057207 B = 0.006297 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.330994 B = 4445.193703 C = 4591.170444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.092 3.908 4 H 0.074 0.926 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.118 4.118 8 C -0.070 4.070 9 C 0.000 4.000 10 C -0.535 4.535 11 H 0.032 0.968 12 C 0.006 3.994 13 N -0.951 5.951 14 Si 0.949 3.051 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.251 1.251 18 C -0.080 4.080 19 C -0.112 4.112 20 H 0.050 0.950 21 H 0.097 0.903 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.119 -13.903 -4.217 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.034 3.966 4 H 0.092 0.908 5 C -0.137 4.137 6 C -0.188 4.188 7 C -0.118 4.118 8 C -0.107 4.107 9 C -0.038 4.038 10 C -0.573 4.573 11 H 0.051 0.949 12 C -0.191 4.191 13 N -0.592 5.592 14 Si 0.772 3.228 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.175 1.175 18 C -0.117 4.117 19 C -0.149 4.149 20 H 0.069 0.931 21 H 0.116 0.884 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.850 -13.998 -4.169 21.554 hybrid contribution 0.661 0.342 0.444 0.867 sum -15.190 -13.656 -3.725 20.762 Atomic orbital electron populations 1.22979 0.79770 1.03762 1.00765 1.87879 1.21279 1.28108 1.95157 1.22161 0.94937 0.84313 0.95142 0.90848 1.20838 0.99682 0.95339 0.97861 1.21860 0.99963 0.98762 0.98260 1.21091 0.96950 0.97146 0.96636 1.20555 0.94754 0.94796 1.00605 1.19433 0.93331 0.95034 0.95972 1.21536 0.96207 0.93541 1.45977 0.94918 1.25994 0.97874 1.00723 0.94488 1.70065 1.09461 1.30113 1.49541 0.85675 0.78419 0.79889 0.78803 1.18853 1.20768 1.17478 1.20404 1.02261 0.94443 0.94557 1.21639 0.95533 0.96329 1.01430 0.93109 0.88418 0.93440 0.89921 0.90823 0.88353 0.92428 0.93051 0.96877 0.96359 0.92432 0.89279 0.90823 0.89669 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.83 113.37 1.23 1.58 16 2 O -0.40 -9.16 10.36 -148.98 -1.54 -10.70 16 3 C 0.09 2.09 2.66 30.73 0.08 2.17 16 4 H 0.07 1.51 7.78 -2.39 -0.02 1.49 16 5 C -0.10 -2.43 5.76 29.66 0.17 -2.26 16 6 C -0.17 -5.09 9.37 27.04 0.25 -4.84 16 7 C -0.12 -3.84 5.09 -15.10 -0.08 -3.92 16 8 C -0.07 -2.81 5.16 29.85 0.15 -2.66 16 9 C 0.00 -0.02 4.02 29.85 0.12 0.10 16 10 C -0.53 -31.71 9.66 25.60 0.25 -31.46 16 11 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 12 C 0.01 0.36 5.47 84.65 0.46 0.82 16 13 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 14 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 15 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 18 C -0.08 -2.16 5.80 29.66 0.17 -1.99 16 19 C -0.11 -2.70 5.67 30.73 0.17 -2.52 16 20 H 0.05 0.66 8.09 -2.39 -0.02 0.64 16 21 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.10 3.05 7.74 -2.91 -0.02 3.03 16 26 H 0.06 2.30 8.11 -2.39 -0.02 2.29 16 27 H 0.05 2.11 7.80 -2.39 -0.02 2.09 16 28 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 29 H 0.02 0.85 7.54 -2.38 -0.02 0.84 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.12 8.11 -2.39 -0.02 2.11 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 Total: -1.00 -66.88 277.70 4.61 -62.27 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.98 Total: 6.51 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 2.99 Total: -44.97 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.30 Total: -60.41 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.54 Total: -10.70 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -66.88 4.61 -62.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.235 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds