Wall clock time and date at job start Sun Mar 29 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48506 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47176 * 299.99456 * 3 2 1 6 6 H 1.48497 * 109.47501 * 59.99805 * 3 2 1 7 7 C 1.37885 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47138 * 180.02562 * 10 9 7 12 12 C 1.38058 * 120.34569 * 270.01830 * 11 10 9 13 13 N 1.31965 * 120.87753 * 179.70401 * 12 11 10 14 14 C 1.32220 * 121.67205 * 0.56521 * 13 12 11 15 15 O 1.35731 * 119.69742 * 179.71161 * 14 13 12 16 16 C 1.39081 * 120.60654 * 359.43759 * 14 13 12 17 17 F 1.35104 * 120.47034 * 180.29537 * 16 14 13 18 18 C 1.38576 * 119.07185 * 0.27440 * 16 14 13 19 19 H 0.97001 * 120.00210 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46852 * 59.99336 * 9 7 2 21 21 H 1.08997 * 109.46991 * 299.99453 * 9 7 2 22 22 H 1.08998 * 109.47027 * 59.99512 * 10 9 7 23 23 H 1.09002 * 109.46917 * 300.00224 * 10 9 7 24 24 H 1.08001 * 119.56303 * 0.02562 * 12 11 10 25 25 H 0.96700 * 114.00141 * 269.73112 * 15 14 13 26 26 H 1.07998 * 120.77379 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 6 1.1421 -5.5714 1.1910 13 7 0.4773 -6.7112 1.2027 14 6 0.1300 -7.3239 0.0837 15 8 -0.5485 -8.4980 0.1425 16 6 0.4485 -6.7734 -1.1532 17 9 0.0870 -7.3987 -2.2949 18 6 1.1414 -5.5742 -1.1982 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5570 -0.8896 21 1 0.6241 -2.5568 0.8903 22 1 2.8719 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 1.4120 -5.1024 2.1257 25 1 0.0198 -9.2802 0.1599 26 1 1.4032 -5.1224 -2.1435 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059559.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:54 Heat of formation + Delta-G solvation = -67.460912 kcal Electronic energy + Delta-G solvation = -13114.998742 eV Core-core repulsion = 10494.059909 eV Total energy + Delta-G solvation = -2620.938833 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.86065 -40.20116 -37.29450 -34.30717 -32.50948 -31.22152 -28.77710 -25.28403 -23.73299 -22.61245 -20.58389 -18.88599 -17.52856 -16.90078 -16.32587 -16.26549 -15.26220 -14.54942 -14.36512 -13.59013 -13.14720 -13.11089 -12.94221 -12.44515 -11.97825 -11.74165 -11.26940 -11.00959 -10.69469 -10.07581 -9.99843 -9.46789 -9.38048 -9.15007 -8.44637 -8.40263 -6.08437 -4.12602 0.97439 1.19323 3.26459 3.34444 3.37527 3.45197 3.70012 4.26760 4.38917 4.72233 4.90695 5.09529 5.27659 5.42558 5.68156 5.89485 6.06924 6.39905 6.47959 6.58535 6.84844 7.41528 7.54660 7.63508 7.88522 7.90546 8.27883 8.94210 9.52490 11.02546 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.061599 B = 0.006180 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.443899 B = 4530.016682 C = 4650.753168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.077 4.077 11 C -0.083 4.083 12 C 0.109 3.891 13 N -0.475 5.475 14 C 0.259 3.741 15 O -0.474 6.474 16 C 0.037 3.963 17 F -0.130 7.130 18 C -0.100 4.100 19 H 0.261 0.739 20 H 0.018 0.982 21 H 0.020 0.980 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.169 0.831 25 H 0.395 0.605 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -12.460 -0.881 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.115 4.115 11 C -0.085 4.085 12 C -0.048 4.048 13 N -0.192 5.192 14 C 0.078 3.922 15 O -0.280 6.280 16 C 0.014 3.986 17 F -0.108 7.108 18 C -0.127 4.127 19 H 0.071 0.929 20 H 0.037 0.963 21 H 0.039 0.961 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.186 0.814 25 H 0.251 0.749 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.592 -12.451 -0.161 12.719 hybrid contribution 0.777 0.876 -1.027 1.557 sum 3.369 -11.575 -1.189 12.114 Atomic orbital electron populations 1.69975 1.06111 1.26735 1.50309 1.25033 0.94847 0.99382 0.95113 0.86511 0.80068 0.83621 0.77654 1.19661 1.20986 1.20947 1.21228 0.93127 0.90693 1.51278 0.92330 1.19129 0.93615 0.90390 0.97837 1.20874 0.98436 0.89771 1.02414 1.21374 0.97332 0.97672 0.92147 1.22595 0.93643 0.89801 0.98738 1.67219 1.10957 1.11193 1.29818 1.19056 0.96098 0.90170 0.86847 1.84859 1.34116 1.13370 1.95690 1.18833 1.02251 0.95285 0.82256 1.91493 1.89885 1.81677 1.47779 1.21612 0.97393 0.92813 1.00851 0.92885 0.96328 0.96122 0.91043 0.91403 0.81368 0.74851 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.66 4.95 -27.89 -0.14 0.52 15 10 C -0.08 -1.41 5.30 -27.89 -0.15 -1.56 15 11 C -0.08 -1.37 5.15 -104.48 -0.54 -1.91 15 12 C 0.11 1.74 10.85 -17.56 -0.19 1.55 15 13 N -0.47 -7.84 10.38 -13.28 -0.14 -7.98 15 14 C 0.26 4.07 7.75 -17.07 -0.13 3.94 15 15 O -0.47 -6.47 13.43 -18.90 -0.25 -6.72 15 16 C 0.04 0.57 7.35 -39.14 -0.29 0.28 15 17 F -0.13 -1.97 17.13 2.25 0.04 -1.93 15 18 C -0.10 -1.57 9.84 -39.25 -0.39 -1.96 15 19 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 20 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.07 1.22 8.09 -51.93 -0.42 0.80 15 23 H 0.07 1.18 8.09 -51.93 -0.42 0.76 15 24 H 0.17 2.34 8.06 -52.49 -0.42 1.91 15 25 H 0.39 3.15 9.06 45.56 0.41 3.56 15 26 H 0.15 2.14 8.06 -52.49 -0.42 1.71 15 LS Contribution 244.56 15.07 3.69 3.69 Total: -1.00 -30.98 244.56 -4.84 -35.82 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -1.66 Total: -1.31 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.23 Total: -12.02 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.60 Total: -33.47 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.25 Total: -6.72 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.98 -4.84 -35.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059559.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.637 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds