Wall clock time and date at job start Sun Mar 29 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48506 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47176 * 299.99456 * 3 2 1 6 6 H 1.48497 * 109.47501 * 59.99805 * 3 2 1 7 7 C 1.37885 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47138 * 180.02562 * 10 9 7 12 12 C 1.38058 * 120.34569 * 270.01830 * 11 10 9 13 13 N 1.31965 * 120.87753 * 179.70401 * 12 11 10 14 14 C 1.32220 * 121.67205 * 0.56521 * 13 12 11 15 15 O 1.35731 * 119.69742 * 179.71161 * 14 13 12 16 16 C 1.39081 * 120.60654 * 359.43759 * 14 13 12 17 17 F 1.35104 * 120.47034 * 180.29537 * 16 14 13 18 18 C 1.38576 * 119.07185 * 0.27440 * 16 14 13 19 19 H 0.97001 * 120.00210 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46852 * 59.99336 * 9 7 2 21 21 H 1.08997 * 109.46991 * 299.99453 * 9 7 2 22 22 H 1.08998 * 109.47027 * 59.99512 * 10 9 7 23 23 H 1.09002 * 109.46917 * 300.00224 * 10 9 7 24 24 H 1.08001 * 119.56303 * 0.02562 * 12 11 10 25 25 H 0.96700 * 114.00141 * 269.73112 * 15 14 13 26 26 H 1.07998 * 120.77379 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 6 1.1421 -5.5714 1.1910 13 7 0.4773 -6.7112 1.2027 14 6 0.1300 -7.3239 0.0837 15 8 -0.5485 -8.4980 0.1425 16 6 0.4485 -6.7734 -1.1532 17 9 0.0870 -7.3987 -2.2949 18 6 1.1414 -5.5742 -1.1982 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5570 -0.8896 21 1 0.6241 -2.5568 0.8903 22 1 2.8719 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 1.4120 -5.1024 2.1257 25 1 0.0198 -9.2802 0.1599 26 1 1.4032 -5.1224 -2.1435 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059559.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:54 Heat of formation + Delta-G solvation = -90.277370 kcal Electronic energy + Delta-G solvation = -13115.988138 eV Core-core repulsion = 10494.059909 eV Total energy + Delta-G solvation = -2621.928229 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.06289 -41.43005 -38.45374 -35.99406 -34.22508 -32.62614 -30.36243 -27.01194 -24.96881 -24.20192 -22.16940 -20.01712 -18.78291 -18.58881 -17.90761 -17.47743 -16.49820 -16.45229 -15.56503 -15.00545 -14.75718 -14.38073 -14.34848 -14.09167 -13.50222 -13.12699 -12.86986 -12.78727 -12.42907 -11.80178 -11.74190 -11.25874 -10.73681 -10.62758 -10.53479 -9.69739 -8.18212 -6.29347 -0.25078 -0.04509 1.43178 1.44434 1.56728 2.32003 2.41264 2.48007 3.07256 3.16371 3.49240 3.68729 3.88756 4.15702 4.50272 4.55181 4.80428 4.83893 5.07700 5.14697 5.45510 5.54103 5.72659 5.85735 6.22921 6.45036 6.71857 6.88865 7.40729 8.93554 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.061599 B = 0.006180 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.443899 B = 4530.016682 C = 4650.753168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.030 3.970 10 C -0.060 4.060 11 C -0.098 4.098 12 C 0.112 3.888 13 N -0.491 5.491 14 C 0.266 3.734 15 O -0.481 6.481 16 C 0.029 3.971 17 F -0.128 7.128 18 C -0.097 4.097 19 H 0.262 0.738 20 H -0.010 1.010 21 H -0.005 1.005 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.185 0.815 25 H 0.420 0.580 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -12.820 -0.866 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.087 0.913 9 C -0.007 4.007 10 C -0.098 4.098 11 C -0.100 4.100 12 C -0.044 4.044 13 N -0.209 5.209 14 C 0.085 3.915 15 O -0.291 6.291 16 C 0.006 3.994 17 F -0.107 7.107 18 C -0.123 4.123 19 H 0.071 0.929 20 H 0.009 0.991 21 H 0.013 0.987 22 H 0.105 0.895 23 H 0.097 0.903 24 H 0.202 0.798 25 H 0.281 0.719 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.812 -12.848 -0.147 13.402 hybrid contribution 0.357 0.872 -1.038 1.402 sum 4.169 -11.975 -1.185 12.735 Atomic orbital electron populations 1.70114 1.07925 1.27656 1.51887 1.25971 0.95645 1.03400 0.94880 0.85416 0.79348 0.78910 0.77474 1.18091 1.20855 1.20750 1.21735 0.93895 0.91845 1.50114 0.91252 1.18995 0.94151 0.92361 0.95195 1.20576 0.97197 0.88348 1.03713 1.21175 0.98536 0.97420 0.92829 1.22863 0.92815 0.89504 0.99258 1.67306 1.11798 1.11584 1.30174 1.19209 0.94908 0.90635 0.86732 1.84795 1.34915 1.13800 1.95577 1.18815 1.02741 0.95398 0.82403 1.91496 1.89912 1.81613 1.47632 1.21779 0.96629 0.92692 1.01186 0.92908 0.99149 0.98676 0.89539 0.90334 0.79772 0.71878 0.81915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.81 13.29 21.45 0.28 -55.53 15 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 15 3 Si 0.96 42.70 29.54 68.60 2.03 44.73 15 4 H -0.26 -10.67 7.11 99.48 0.71 -9.97 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.54 -28.65 9.11 25.60 0.23 -28.42 15 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 15 9 C 0.03 1.47 4.95 29.85 0.15 1.62 15 10 C -0.06 -2.14 5.30 29.85 0.16 -1.99 15 11 C -0.10 -3.11 5.15 -19.77 -0.10 -3.21 15 12 C 0.11 3.42 10.85 84.63 0.92 4.34 15 13 N -0.49 -15.51 10.38 -308.77 -3.21 -18.72 15 14 C 0.27 7.93 7.75 84.84 0.66 8.59 15 15 O -0.48 -12.14 13.43 -90.54 -1.22 -13.35 15 16 C 0.03 0.87 7.35 22.55 0.17 1.03 15 17 F -0.13 -3.69 17.13 44.97 0.77 -2.92 15 18 C -0.10 -2.91 9.84 22.48 0.22 -2.69 15 19 H 0.26 14.76 8.31 -92.71 -0.77 13.99 15 20 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 15 21 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 15 22 H 0.09 2.79 8.09 -2.39 -0.02 2.77 15 23 H 0.08 2.60 8.09 -2.39 -0.02 2.58 15 24 H 0.19 4.85 8.06 -2.91 -0.02 4.83 15 25 H 0.42 5.69 9.06 -74.06 -0.67 5.02 15 26 H 0.16 4.40 8.06 -2.91 -0.02 4.37 15 Total: -1.00 -65.28 244.56 2.05 -63.22 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 0.53 Total: 2.91 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 2.86 Total: -20.34 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -2.92 Total: -74.24 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.22 Total: -13.35 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.77 Total: -2.92 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.28 2.05 -63.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059559.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.055 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds