Wall clock time and date at job start Sun Mar 29 2020 21:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00022 * 2 1 4 4 N 1.46506 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.34949 * 126.03292 * 0.02562 * 4 3 2 6 6 C 1.35318 * 107.74247 * 179.97438 * 5 4 3 7 7 C 1.50700 * 126.04120 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47215 * 270.00148 * 7 6 5 9 9 C 1.50700 * 109.47215 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99732 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00239 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99840 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00238 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.46879 * 89.99765 * 13 11 9 15 15 H 1.48493 * 109.47302 * 209.99794 * 13 11 9 16 16 H 1.48499 * 109.47236 * 330.00138 * 13 11 9 17 17 C 1.39875 * 107.92186 * 0.02562 * 6 5 4 18 18 N 1.30839 * 108.20184 * 359.97438 * 17 6 5 19 19 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47331 * 300.00127 * 1 2 3 21 21 H 1.08997 * 109.47174 * 60.00172 * 1 2 3 22 22 H 1.08998 * 109.47226 * 60.00144 * 3 2 1 23 23 H 1.08992 * 109.47206 * 299.99787 * 3 2 1 24 24 H 1.07998 * 126.13002 * 359.96987 * 5 4 3 25 25 H 1.09003 * 109.47079 * 30.00095 * 7 6 5 26 26 H 1.09002 * 109.47262 * 149.99741 * 7 6 5 27 27 H 1.09003 * 109.47054 * 299.99962 * 8 7 6 28 28 H 1.08997 * 109.46902 * 59.99799 * 8 7 6 29 29 H 0.96996 * 120.00379 * 180.02562 * 12 11 9 30 30 H 1.08003 * 125.89835 * 179.73925 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1898 0.0006 5 6 4.1759 0.0392 0.0006 6 6 5.4902 0.3611 0.0007 7 6 6.6413 -0.6115 0.0002 8 6 7.0309 -0.9414 1.4425 9 6 8.1824 -1.9135 1.4420 10 1 8.5948 -2.2616 0.5065 11 6 8.7088 -2.3594 2.6358 12 7 8.2063 -1.9359 3.7750 13 14 10.1357 -3.5649 2.6352 14 1 11.4174 -2.8148 2.6360 15 1 10.0618 -4.4200 3.8470 16 1 10.0623 -4.4182 1.4220 17 6 5.5917 1.7562 0.0014 18 7 4.3817 2.2540 0.0011 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6886 1.8464 0.8900 23 1 1.6886 1.8463 -0.8899 24 1 3.7649 -0.9595 0.0006 25 1 6.3444 -1.5256 -0.5141 26 1 7.4932 -0.1660 -0.5135 27 1 7.3278 -0.0273 1.9568 28 1 6.1790 -1.3869 1.9561 29 1 8.5768 -2.2492 4.6149 30 1 6.5102 2.3243 0.0056 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:23 Heat of formation + Delta-G solvation = 5.136652 kcal Electronic energy + Delta-G solvation = -13215.676846 eV Core-core repulsion = 10819.065046 eV Total energy + Delta-G solvation = -2396.611800 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.12899 -39.01405 -35.96275 -34.03816 -32.81213 -30.35951 -28.23472 -27.07971 -25.67188 -23.09528 -21.99895 -20.90242 -18.60206 -18.18044 -17.46471 -17.16741 -16.47308 -15.55591 -15.47908 -15.00003 -14.76296 -14.35068 -13.83586 -13.55107 -13.48949 -12.98339 -12.76154 -12.51525 -12.38203 -11.99337 -11.60350 -11.41754 -11.12318 -11.07783 -10.50043 -10.30536 -9.17782 -8.13763 -6.25571 0.90995 1.24631 1.43786 1.45625 1.56712 1.89292 2.46248 2.76577 3.18881 3.76777 3.96683 4.06551 4.13610 4.42687 4.51147 4.51522 4.64822 4.82588 4.89631 5.02507 5.22083 5.26208 5.56408 5.59226 5.85602 5.91543 5.93216 6.08982 6.31230 6.76549 6.92755 7.43733 8.97887 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046755 B = 0.005901 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.718742 B = 4743.922398 C = 5052.942445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.423 6.423 3 C 0.315 3.685 4 N -0.391 5.391 5 C 0.066 3.934 6 C -0.242 4.242 7 C -0.023 4.023 8 C 0.036 3.964 9 C -0.540 4.540 10 H 0.065 0.935 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.050 3.950 18 N -0.313 5.313 19 H 0.106 0.894 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.180 0.820 25 H 0.059 0.941 26 H 0.065 0.935 27 H -0.013 1.013 28 H -0.017 1.017 29 H 0.262 0.738 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 4.843 -8.675 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.342 6.342 3 C 0.156 3.844 4 N -0.176 5.176 5 C -0.080 4.080 6 C -0.253 4.253 7 C -0.061 4.061 8 C -0.001 4.001 9 C -0.578 4.578 10 H 0.083 0.917 11 C -0.200 4.200 12 N -0.578 5.578 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.135 4.135 18 N -0.136 5.136 19 H 0.125 0.875 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.114 0.886 24 H 0.198 0.802 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.005 0.995 28 H 0.002 0.998 29 H 0.071 0.929 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.865 5.731 -8.506 18.060 hybrid contribution 0.986 -1.110 0.545 1.581 sum -13.879 4.621 -7.961 16.654 Atomic orbital electron populations 1.23043 0.75839 1.05067 1.02126 1.87730 1.23928 1.26673 1.95849 1.22183 0.73469 0.85494 1.03244 1.48722 1.06487 1.04208 1.58159 1.22393 0.91661 0.93009 1.00898 1.20527 0.94955 0.95006 1.14789 1.19806 0.93485 0.95508 0.97325 1.18945 0.94343 0.94437 0.92411 1.21767 1.16841 1.26388 0.92805 0.91710 1.26013 1.00146 0.98639 0.95188 1.70129 1.43553 1.46116 0.98001 0.85426 0.78998 0.78638 0.77846 1.19749 1.21002 1.18492 1.24163 0.96330 0.94088 0.98920 1.77165 0.98774 1.10487 1.27179 0.87517 0.92048 0.91492 0.89576 0.88606 0.80246 0.92248 0.91656 0.99474 0.99812 0.92941 0.78115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -9.49 9.86 -148.98 -1.47 -10.96 16 3 C 0.32 7.19 7.66 127.77 0.98 8.17 16 4 N -0.39 -12.83 4.01 -463.69 -1.86 -14.69 16 5 C 0.07 2.39 10.78 83.54 0.90 3.29 16 6 C -0.24 -9.54 5.35 -20.14 -0.11 -9.65 16 7 C -0.02 -0.98 5.64 29.85 0.17 -0.81 16 8 C 0.04 1.98 4.96 29.85 0.15 2.13 16 9 C -0.54 -31.37 9.11 25.60 0.23 -31.13 16 10 H 0.06 3.56 7.74 -2.91 -0.02 3.53 16 11 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 12 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 13 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 C 0.05 1.82 11.96 85.24 1.02 2.84 16 18 N -0.31 -11.11 12.58 -57.02 -0.72 -11.83 16 19 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 21 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.18 6.02 7.78 -2.91 -0.02 6.00 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.20 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -71.93 267.68 4.42 -67.51 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.11 Total: 4.69 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 5.05 Total: -23.19 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -2.29 Total: -84.99 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.47 Total: -10.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.93 4.42 -67.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.647 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds