Wall clock time and date at job start Sun Mar 29 2020 21:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00535 * 2 1 4 4 H 1.48498 * 109.47382 * 269.99848 * 3 2 1 5 5 H 1.48499 * 109.47091 * 29.99658 * 3 2 1 6 6 H 1.48502 * 109.47535 * 149.99465 * 3 2 1 7 7 C 1.37881 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.38026 * 120.32733 * 89.99936 * 11 10 9 13 13 N 1.31980 * 120.89777 * 180.02562 * 12 11 10 14 14 C 1.32364 * 121.64821 * 0.02562 * 13 12 11 15 15 N 1.39149 * 119.72097 * 179.97438 * 14 13 12 16 16 C 1.39305 * 120.56509 * 359.97438 * 14 13 12 17 17 F 1.35102 * 120.47087 * 179.72444 * 16 14 13 18 18 C 1.38480 * 119.05786 * 0.02562 * 16 14 13 19 19 H 0.96999 * 119.99526 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47154 * 59.99741 * 9 7 2 21 21 H 1.08994 * 109.47208 * 299.99561 * 9 7 2 22 22 H 1.08999 * 109.46978 * 60.00005 * 10 9 7 23 23 H 1.08999 * 109.47429 * 300.00229 * 10 9 7 24 24 H 1.07991 * 119.55325 * 0.02562 * 12 11 10 25 25 H 0.97004 * 120.00334 * 180.02562 * 15 14 13 26 26 H 0.97005 * 119.99518 * 0.02562 * 15 14 13 27 27 H 1.08005 * 120.75859 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9672 -0.0001 12 6 1.1433 -5.5704 -1.1918 13 7 0.4829 -6.7130 -1.2055 14 6 0.1288 -7.3240 -0.0859 15 7 -0.5673 -8.5273 -0.1472 16 6 0.4469 -6.7726 1.1531 17 9 0.0797 -7.3950 2.2946 18 6 1.1395 -5.5743 1.1982 19 1 -0.4849 0.8401 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6239 -2.5567 0.8903 22 1 2.8716 -3.6045 0.8905 23 1 2.8717 -3.6045 -0.8894 24 1 1.4150 -5.1011 -2.1256 25 1 -0.8291 -8.9784 0.6707 26 1 -0.7906 -8.9151 -1.0078 27 1 1.3999 -5.1221 2.1438 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:42 Heat of formation + Delta-G solvation = -27.809755 kcal Electronic energy + Delta-G solvation = -13013.139019 eV Core-core repulsion = 10491.638250 eV Total energy + Delta-G solvation = -2521.500768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.66740 -39.83307 -35.39113 -33.50346 -32.13777 -30.87278 -28.16301 -24.93460 -23.50539 -22.26520 -20.35722 -17.88025 -17.37909 -16.70302 -16.16761 -15.60564 -15.31429 -14.50674 -14.36362 -13.48953 -13.25443 -12.90119 -12.63350 -12.35369 -11.84034 -11.34391 -10.94933 -10.74422 -10.43283 -9.94715 -9.69824 -9.36749 -9.21347 -9.03796 -8.36636 -7.47155 -6.01282 -4.04692 1.32460 1.61283 3.31502 3.38013 3.40908 3.52059 4.01921 4.36812 4.45016 4.78810 5.11977 5.34461 5.35379 5.61721 5.86801 6.15402 6.23027 6.58126 6.68751 6.79211 7.02299 7.30522 7.47832 7.65354 7.77256 7.97903 8.29371 8.38077 9.02432 9.59698 11.09687 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.061102 B = 0.006215 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.137161 B = 4504.077850 C = 4625.642456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.069 4.069 11 C -0.135 4.135 12 C 0.136 3.864 13 N -0.521 5.521 14 C 0.363 3.637 15 N -0.855 5.855 16 C -0.025 4.025 17 F -0.143 7.143 18 C -0.068 4.068 19 H 0.261 0.739 20 H 0.018 0.982 21 H 0.017 0.983 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.163 0.837 25 H 0.407 0.593 26 H 0.404 0.596 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -13.603 0.595 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.107 4.107 11 C -0.140 4.140 12 C -0.021 4.021 13 N -0.237 5.237 14 C 0.125 3.875 15 N -0.401 5.401 16 C -0.051 4.051 17 F -0.122 7.122 18 C -0.094 4.094 19 H 0.070 0.930 20 H 0.037 0.963 21 H 0.035 0.965 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.180 0.820 25 H 0.237 0.763 26 H 0.233 0.767 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.584 -13.848 -0.148 13.861 hybrid contribution 0.255 0.927 1.027 1.407 sum 0.839 -12.921 0.879 12.978 Atomic orbital electron populations 1.69970 1.06084 1.26662 1.50585 1.25027 0.94835 0.99285 0.95268 0.86588 0.79826 0.83435 0.78118 1.20635 1.21263 1.19852 1.21243 0.93086 0.90905 1.50911 0.92491 1.19113 0.93708 0.90526 0.97605 1.20706 0.98132 0.90151 1.01747 1.21003 1.01759 0.99095 0.92099 1.22440 0.92185 0.89024 0.98425 1.67229 1.17086 1.12021 1.27406 1.18279 0.92627 0.88484 0.88082 1.42010 1.63855 1.22676 1.11554 1.17980 1.09190 0.96706 0.81214 1.91418 1.90494 1.82080 1.48196 1.21395 0.95498 0.92146 1.00391 0.92956 0.96325 0.96481 0.91982 0.91679 0.81970 0.76333 0.76655 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.69 4.95 -27.88 -0.14 0.55 15 10 C -0.07 -1.35 5.30 -27.88 -0.15 -1.50 15 11 C -0.14 -2.39 5.15 -104.47 -0.54 -2.92 15 12 C 0.14 2.27 10.84 -17.57 -0.19 2.08 15 13 N -0.52 -8.60 10.39 -12.37 -0.13 -8.73 15 14 C 0.36 5.60 7.76 -154.84 -1.20 4.40 15 15 N -0.86 -9.76 9.08 31.18 0.28 -9.47 15 16 C -0.02 -0.40 7.35 -39.10 -0.29 -0.68 15 17 F -0.14 -2.15 16.65 2.25 0.04 -2.11 15 18 C -0.07 -1.13 9.84 -39.26 -0.39 -1.52 15 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 20 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 22 H 0.06 1.17 8.10 -51.93 -0.42 0.75 15 23 H 0.06 1.20 8.09 -51.93 -0.42 0.78 15 24 H 0.16 2.42 8.06 -52.49 -0.42 1.99 15 25 H 0.41 3.84 8.30 -40.82 -0.34 3.50 15 26 H 0.40 3.91 8.95 -40.82 -0.37 3.54 15 27 H 0.14 2.22 8.06 -52.48 -0.42 1.80 15 LS Contribution 247.92 15.07 3.74 3.74 Total: -1.00 -30.64 247.92 -6.43 -37.08 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.78 Total: 1.95 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.30 Total: -12.83 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.89 Total: -44.17 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.64 -6.43 -37.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.268 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds