Wall clock time and date at job start Sun Mar 29 2020 21:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00535 * 2 1 4 4 H 1.48498 * 109.47382 * 269.99848 * 3 2 1 5 5 H 1.48499 * 109.47091 * 29.99658 * 3 2 1 6 6 H 1.48502 * 109.47535 * 149.99465 * 3 2 1 7 7 C 1.37881 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.38026 * 120.32733 * 89.99936 * 11 10 9 13 13 N 1.31980 * 120.89777 * 180.02562 * 12 11 10 14 14 C 1.32364 * 121.64821 * 0.02562 * 13 12 11 15 15 N 1.39149 * 119.72097 * 179.97438 * 14 13 12 16 16 C 1.39305 * 120.56509 * 359.97438 * 14 13 12 17 17 F 1.35102 * 120.47087 * 179.72444 * 16 14 13 18 18 C 1.38480 * 119.05786 * 0.02562 * 16 14 13 19 19 H 0.96999 * 119.99526 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47154 * 59.99741 * 9 7 2 21 21 H 1.08994 * 109.47208 * 299.99561 * 9 7 2 22 22 H 1.08999 * 109.46978 * 60.00005 * 10 9 7 23 23 H 1.08999 * 109.47429 * 300.00229 * 10 9 7 24 24 H 1.07991 * 119.55325 * 0.02562 * 12 11 10 25 25 H 0.97004 * 120.00334 * 180.02562 * 15 14 13 26 26 H 0.97005 * 119.99518 * 0.02562 * 15 14 13 27 27 H 1.08005 * 120.75859 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9672 -0.0001 12 6 1.1433 -5.5704 -1.1918 13 7 0.4829 -6.7130 -1.2055 14 6 0.1288 -7.3240 -0.0859 15 7 -0.5673 -8.5273 -0.1472 16 6 0.4469 -6.7726 1.1531 17 9 0.0797 -7.3950 2.2946 18 6 1.1395 -5.5743 1.1982 19 1 -0.4849 0.8401 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6239 -2.5567 0.8903 22 1 2.8716 -3.6045 0.8905 23 1 2.8717 -3.6045 -0.8894 24 1 1.4150 -5.1011 -2.1256 25 1 -0.8291 -8.9784 0.6707 26 1 -0.7906 -8.9151 -1.0078 27 1 1.3999 -5.1221 2.1438 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:42 Heat of formation + Delta-G solvation = -47.419484 kcal Electronic energy + Delta-G solvation = -13013.989360 eV Core-core repulsion = 10491.638250 eV Total energy + Delta-G solvation = -2522.351110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.88440 -41.09992 -36.78680 -35.22593 -33.69300 -32.37741 -29.74977 -26.70611 -24.77076 -23.90008 -21.97352 -19.06728 -18.60399 -18.48423 -17.73280 -16.84998 -16.48229 -16.40952 -15.63324 -14.87040 -14.73448 -14.54951 -14.17653 -13.92442 -13.46812 -13.05168 -12.80197 -12.47982 -12.01298 -11.73919 -11.30889 -11.23386 -10.62117 -10.54219 -10.49839 -8.69188 -8.15773 -6.27404 0.04888 0.31658 1.43961 1.44749 1.55771 2.42650 2.45178 2.73390 3.13927 3.17491 3.55130 3.84766 4.07942 4.27974 4.57394 4.72926 4.91983 4.93259 5.17253 5.27518 5.54848 5.60675 5.80041 5.88981 6.21887 6.26703 6.46975 6.90573 7.15997 7.42148 8.95355 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.061102 B = 0.006215 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.137161 B = 4504.077850 C = 4625.642456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.032 3.968 10 C -0.053 4.053 11 C -0.156 4.156 12 C 0.137 3.863 13 N -0.532 5.532 14 C 0.366 3.634 15 N -0.836 5.836 16 C -0.034 4.034 17 F -0.137 7.137 18 C -0.071 4.071 19 H 0.262 0.738 20 H -0.007 1.007 21 H -0.012 1.012 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.176 0.824 25 H 0.418 0.582 26 H 0.415 0.585 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -14.196 0.500 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.161 4.161 12 C -0.019 4.019 13 N -0.250 5.250 14 C 0.126 3.874 15 N -0.382 5.382 16 C -0.060 4.060 17 F -0.116 7.116 18 C -0.097 4.097 19 H 0.071 0.929 20 H 0.011 0.989 21 H 0.006 0.994 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.193 0.807 25 H 0.250 0.750 26 H 0.246 0.754 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.366 -14.490 -0.241 14.557 hybrid contribution -0.059 0.991 1.068 1.458 sum 1.307 -13.499 0.828 13.588 Atomic orbital electron populations 1.70112 1.07898 1.27660 1.51890 1.25979 0.95685 1.03377 0.94875 0.85460 0.78704 0.78505 0.78460 1.19790 1.21190 1.18528 1.21737 0.93808 0.92088 1.50170 0.91537 1.18979 0.94153 0.92438 0.94904 1.20406 0.96947 0.89058 1.02649 1.20785 1.03470 0.98872 0.92953 1.22663 0.91512 0.89045 0.98698 1.67321 1.17777 1.12160 1.27705 1.18528 0.91967 0.89190 0.87682 1.42021 1.62138 1.21136 1.12941 1.17970 1.09585 0.96741 0.81714 1.91430 1.90425 1.81884 1.47894 1.21533 0.95211 0.92461 1.00493 0.92916 0.98867 0.99388 0.91340 0.90466 0.80654 0.74973 0.75353 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.84 13.29 21.45 0.28 -56.55 15 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 15 3 Si 0.96 43.66 29.54 68.60 2.03 45.68 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 15 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 15 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 15 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 15 9 C 0.03 1.66 4.95 29.85 0.15 1.81 15 10 C -0.05 -2.04 5.30 29.85 0.16 -1.88 15 11 C -0.16 -5.43 5.15 -19.76 -0.10 -5.54 15 12 C 0.14 4.46 10.84 84.62 0.92 5.38 15 13 N -0.53 -16.80 10.39 -193.04 -2.01 -18.80 15 14 C 0.37 10.64 7.76 133.07 1.03 11.67 15 15 N -0.84 -17.04 9.08 -55.25 -0.50 -17.54 15 16 C -0.03 -1.03 7.35 22.58 0.17 -0.87 15 17 F -0.14 -3.90 16.65 44.97 0.75 -3.15 15 18 C -0.07 -2.32 9.84 22.48 0.22 -2.10 15 19 H 0.26 15.01 8.31 -92.71 -0.77 14.24 15 20 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 15 21 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 15 22 H 0.07 2.53 8.10 -2.39 -0.02 2.51 15 23 H 0.08 2.77 8.09 -2.39 -0.02 2.75 15 24 H 0.18 5.06 8.06 -2.92 -0.02 5.04 15 25 H 0.42 6.79 8.30 -92.71 -0.77 6.02 15 26 H 0.42 6.94 8.95 -92.70 -0.83 6.11 15 27 H 0.15 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -64.82 247.92 3.39 -61.43 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -0.40 Total: 9.73 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 3.24 Total: -20.80 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.22 Total: -92.90 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.75 Total: -3.15 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -64.82 3.39 -61.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.011 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds