Wall clock time and date at job start Sun Mar 29 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99899 * 2 1 4 4 H 1.48495 * 109.47304 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.47190 * 29.99843 * 3 2 1 6 6 H 1.48505 * 109.47078 * 149.99703 * 3 2 1 7 7 C 1.37877 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.39870 * 126.04185 * 269.97668 * 11 10 9 13 13 N 1.30839 * 108.19862 * 180.02562 * 12 11 10 14 14 N 1.40079 * 108.20849 * 359.97438 * 13 12 11 15 15 C 1.46502 * 126.03442 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47267 * 304.99629 * 15 14 13 17 17 O 1.42897 * 109.47331 * 179.97438 * 16 15 14 18 18 C 1.34948 * 107.92564 * 0.02562 * 14 13 12 19 19 H 0.97002 * 120.00287 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47300 * 60.00031 * 9 7 2 21 21 H 1.09000 * 109.47336 * 300.00121 * 9 7 2 22 22 H 1.08995 * 109.47187 * 59.99648 * 10 9 7 23 23 H 1.09005 * 109.47216 * 300.00307 * 10 9 7 24 24 H 1.07997 * 125.89658 * 359.97438 * 12 11 10 25 25 H 1.08994 * 109.47186 * 64.99894 * 15 14 13 26 26 H 1.09001 * 109.46653 * 185.00231 * 15 14 13 27 27 H 1.08994 * 109.47234 * 300.00235 * 16 15 14 28 28 H 1.09007 * 109.46596 * 60.00293 * 16 15 14 29 29 H 0.96695 * 114.00592 * 180.02562 * 17 16 15 30 30 H 1.08007 * 126.12251 * 180.26869 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0009 12 6 6.3514 -2.6369 -1.1301 13 7 7.5969 -2.6373 -0.7292 14 7 7.6059 -2.6366 0.6716 15 6 8.7961 -2.6373 1.5258 16 6 9.6917 -3.8201 1.1516 17 8 10.8529 -3.8204 1.9844 18 6 6.3246 -2.6364 1.0951 19 1 -0.4851 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8752 -0.6804 -0.8888 22 1 3.6585 -3.1502 -0.8892 23 1 3.6578 -3.1506 0.8907 24 1 6.0166 -2.6376 -2.1568 25 1 9.3454 -1.7066 1.3843 26 1 8.4942 -2.7262 2.5694 27 1 9.1424 -4.7508 1.2931 28 1 9.9936 -3.7313 0.1080 29 1 11.4674 -4.5445 1.8023 30 1 5.9939 -2.6318 2.1233 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:20 Heat of formation + Delta-G solvation = 16.411430 kcal Electronic energy + Delta-G solvation = -13157.195754 eV Core-core repulsion = 10761.072865 eV Total energy + Delta-G solvation = -2396.122889 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.93600 -37.36873 -34.41258 -33.10887 -31.66587 -29.54523 -28.12464 -24.80398 -23.39708 -21.02142 -20.49290 -19.44338 -17.98677 -16.77890 -16.11422 -15.75166 -14.97696 -14.19301 -14.04108 -13.72838 -13.34504 -12.77864 -12.64416 -12.33573 -12.07083 -11.77782 -11.34574 -10.97063 -10.55623 -10.34785 -10.13543 -9.70306 -9.67214 -9.18235 -9.11821 -8.48875 -7.89865 -6.00133 -3.97506 2.11241 2.52975 3.18905 3.34903 3.42017 3.47417 3.94459 4.50016 4.53376 4.77340 4.99359 5.13654 5.16935 5.34815 5.45898 5.48465 5.89199 5.92765 6.25335 6.60221 6.65799 6.84037 7.03631 7.18045 7.27082 7.40142 7.53175 7.85454 7.95298 8.58740 9.05549 9.63361 11.13418 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.059493 B = 0.005797 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.534342 B = 4828.620303 C = 4977.903136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.032 4.032 11 C -0.210 4.210 12 C 0.053 3.947 13 N -0.308 5.308 14 N -0.383 5.383 15 C 0.141 3.859 16 C 0.067 3.933 17 O -0.573 6.573 18 C 0.044 3.956 19 H 0.262 0.738 20 H 0.013 0.987 21 H 0.011 0.989 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.182 0.818 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.386 0.614 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.054 -7.074 2.691 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.044 4.044 10 C -0.070 4.070 11 C -0.220 4.220 12 C -0.133 4.133 13 N -0.130 5.130 14 N -0.168 5.168 15 C 0.019 3.981 16 C -0.012 4.012 17 O -0.379 6.379 18 C -0.099 4.099 19 H 0.072 0.928 20 H 0.032 0.968 21 H 0.029 0.971 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.199 0.801 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.234 0.766 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 18.967 -6.429 2.691 20.207 hybrid contribution -0.272 0.501 0.016 0.570 sum 18.695 -5.928 2.707 19.798 Atomic orbital electron populations 1.69917 1.06293 1.26801 1.51486 1.25013 0.94677 0.99115 0.94643 0.86788 0.80334 0.83695 0.78528 1.20325 1.21511 1.19084 1.21202 0.89643 0.94435 1.50474 0.90962 1.19556 0.96523 0.92085 0.96278 1.19931 0.85916 0.99658 1.01536 1.20642 0.98355 1.11780 0.91261 1.23861 0.89743 0.99514 1.00184 1.77197 1.21575 1.25558 0.88643 1.48240 1.04840 1.59075 1.04662 1.21240 0.84262 0.99469 0.93167 1.22322 0.86651 0.97672 0.94541 1.86358 1.34223 1.55273 1.62024 1.22345 0.83451 1.03746 1.00366 0.92817 0.96842 0.97071 0.91871 0.92187 0.80108 0.89453 0.88149 0.93069 0.92045 0.76603 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.17 4.02 -27.89 -0.11 -0.28 16 10 C -0.03 -0.63 5.64 -27.88 -0.16 -0.79 16 11 C -0.21 -3.67 5.35 -105.05 -0.56 -4.23 16 12 C 0.05 0.88 11.96 -17.36 -0.21 0.67 16 13 N -0.31 -5.06 12.42 30.62 0.38 -4.68 16 14 N -0.38 -5.61 3.68 -61.36 -0.23 -5.83 16 15 C 0.14 1.56 6.88 -4.04 -0.03 1.53 16 16 C 0.07 0.65 7.23 37.16 0.27 0.92 16 17 O -0.57 -5.02 13.66 -35.23 -0.48 -5.50 16 18 C 0.04 0.69 11.36 -17.22 -0.20 0.49 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 21 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.18 2.58 8.06 -52.49 -0.42 2.15 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 0.92 8.07 -51.93 -0.42 0.51 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.39 1.60 9.12 45.56 0.42 2.01 16 30 H 0.17 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -33.72 264.59 -4.98 -38.70 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.32 Total: -1.78 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.42 Total: -15.02 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.93 Total: -37.88 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.48 Total: -5.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.72 -4.98 -38.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.107 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds