Wall clock time and date at job start Sun Mar 29 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99899 * 2 1 4 4 H 1.48495 * 109.47304 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.47190 * 29.99843 * 3 2 1 6 6 H 1.48505 * 109.47078 * 149.99703 * 3 2 1 7 7 C 1.37877 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.39870 * 126.04185 * 269.97668 * 11 10 9 13 13 N 1.30839 * 108.19862 * 180.02562 * 12 11 10 14 14 N 1.40079 * 108.20849 * 359.97438 * 13 12 11 15 15 C 1.46502 * 126.03442 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47267 * 304.99629 * 15 14 13 17 17 O 1.42897 * 109.47331 * 179.97438 * 16 15 14 18 18 C 1.34948 * 107.92564 * 0.02562 * 14 13 12 19 19 H 0.97002 * 120.00287 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47300 * 60.00031 * 9 7 2 21 21 H 1.09000 * 109.47336 * 300.00121 * 9 7 2 22 22 H 1.08995 * 109.47187 * 59.99648 * 10 9 7 23 23 H 1.09005 * 109.47216 * 300.00307 * 10 9 7 24 24 H 1.07997 * 125.89658 * 359.97438 * 12 11 10 25 25 H 1.08994 * 109.47186 * 64.99894 * 15 14 13 26 26 H 1.09001 * 109.46653 * 185.00231 * 15 14 13 27 27 H 1.08994 * 109.47234 * 300.00235 * 16 15 14 28 28 H 1.09007 * 109.46596 * 60.00293 * 16 15 14 29 29 H 0.96695 * 114.00592 * 180.02562 * 17 16 15 30 30 H 1.08007 * 126.12251 * 180.26869 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5285 -2.6365 0.0009 12 6 6.3514 -2.6369 -1.1301 13 7 7.5969 -2.6373 -0.7292 14 7 7.6059 -2.6366 0.6716 15 6 8.7961 -2.6373 1.5258 16 6 9.6917 -3.8201 1.1516 17 8 10.8529 -3.8204 1.9844 18 6 6.3246 -2.6364 1.0951 19 1 -0.4851 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8752 -0.6804 -0.8888 22 1 3.6585 -3.1502 -0.8892 23 1 3.6578 -3.1506 0.8907 24 1 6.0166 -2.6376 -2.1568 25 1 9.3454 -1.7066 1.3843 26 1 8.4942 -2.7262 2.5694 27 1 9.1424 -4.7508 1.2931 28 1 9.9936 -3.7313 0.1080 29 1 11.4674 -4.5445 1.8023 30 1 5.9939 -2.6318 2.1233 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:20 Heat of formation + Delta-G solvation = -8.563052 kcal Electronic energy + Delta-G solvation = -13158.278728 eV Core-core repulsion = 10761.072865 eV Total energy + Delta-G solvation = -2397.205863 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.13054 -38.08344 -36.05139 -34.56548 -33.42331 -30.83942 -29.49255 -26.48194 -24.37316 -22.81021 -21.61306 -20.81030 -18.98922 -18.67430 -17.15853 -16.68551 -16.33093 -15.84114 -15.28487 -14.97023 -14.76343 -14.52875 -14.13039 -13.64672 -13.45409 -12.95112 -12.80392 -12.62101 -12.04915 -11.92867 -11.65417 -11.36818 -11.20384 -11.03660 -10.72232 -10.34716 -9.20446 -8.25780 -6.28489 0.93374 1.37562 1.38360 1.50786 1.51012 1.90029 2.38795 3.10170 3.19479 3.71959 3.99170 4.04313 4.11793 4.25679 4.45924 4.54964 4.66160 4.73313 4.88463 4.95938 5.16246 5.17722 5.53837 5.67556 5.71404 5.79950 6.13837 6.34152 6.71555 6.76146 6.80192 7.36297 8.91072 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.059493 B = 0.005797 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.534342 B = 4828.620303 C = 4977.903136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.529 4.529 8 H 0.037 0.963 9 C -0.001 4.001 10 C -0.019 4.019 11 C -0.240 4.240 12 C 0.045 3.955 13 N -0.324 5.324 14 N -0.377 5.377 15 C 0.131 3.869 16 C 0.077 3.923 17 O -0.582 6.582 18 C 0.057 3.943 19 H 0.265 0.735 20 H 0.015 0.985 21 H 0.011 0.989 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.195 0.805 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.406 0.594 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.310 -6.631 3.441 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.567 4.567 8 H 0.055 0.945 9 C -0.039 4.039 10 C -0.057 4.057 11 C -0.251 4.251 12 C -0.140 4.140 13 N -0.146 5.146 14 N -0.161 5.161 15 C 0.010 3.990 16 C -0.002 4.002 17 O -0.391 6.391 18 C -0.088 4.088 19 H 0.074 0.926 20 H 0.033 0.967 21 H 0.029 0.971 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.107 0.893 26 H 0.142 0.858 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.257 0.743 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 21.274 -6.014 3.436 22.373 hybrid contribution -0.944 0.267 -0.170 0.995 sum 20.330 -5.747 3.266 21.378 Atomic orbital electron populations 1.70064 1.08191 1.28013 1.53081 1.25946 0.95507 1.03258 0.94352 0.85691 0.79349 0.78725 0.79044 1.19447 1.20956 1.17544 1.21572 0.92207 0.93176 1.49719 0.94482 1.19479 0.93294 0.95072 0.96051 1.19637 0.87894 0.96749 1.01452 1.20428 0.97007 1.14982 0.92646 1.24113 0.89702 0.99340 1.00836 1.77172 1.21448 1.26104 0.89850 1.48503 1.05652 1.57606 1.04381 1.21564 0.83460 1.00207 0.93735 1.22101 0.86887 0.97126 0.94060 1.86312 1.34310 1.56660 1.61808 1.22729 0.83500 1.01494 1.01106 0.92582 0.96703 0.97082 0.92296 0.92111 0.78833 0.89275 0.85841 0.92758 0.93019 0.74269 0.78451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.95 45.27 27.47 68.60 1.88 47.16 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.53 -30.63 9.66 25.60 0.25 -30.39 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C 0.00 -0.06 4.02 29.85 0.12 0.06 16 10 C -0.02 -0.72 5.64 29.85 0.17 -0.56 16 11 C -0.24 -7.99 5.35 -20.14 -0.11 -8.09 16 12 C 0.05 1.44 11.96 85.24 1.02 2.46 16 13 N -0.32 -10.04 12.42 -57.02 -0.71 -10.74 16 14 N -0.38 -10.06 3.68 -348.05 -1.28 -11.34 16 15 C 0.13 2.53 6.88 86.38 0.59 3.12 16 16 C 0.08 1.31 7.23 71.98 0.52 1.83 16 17 O -0.58 -8.61 13.66 -148.98 -2.03 -10.64 16 18 C 0.06 1.60 11.36 83.54 0.95 2.55 16 19 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 20 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 21 H 0.01 0.51 7.57 -2.39 -0.02 0.50 16 22 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 24 H 0.19 5.30 8.06 -2.91 -0.02 5.28 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.12 1.82 8.07 -2.39 -0.02 1.80 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.41 2.27 9.12 -74.06 -0.68 1.60 16 30 H 0.20 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -71.74 264.59 2.53 -69.20 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.40 Total: 4.49 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.97 Total: -28.21 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.69 Total: -82.00 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -2.03 Total: -10.64 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.16 kcal Total: -71.74 2.53 -69.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.641 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds