Wall clock time and date at job start Sun Mar 29 2020 22:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46928 * 89.99963 * 6 5 4 8 8 C 1.53000 * 109.46936 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47009 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99793 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99865 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00179 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99938 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47258 * 89.99700 * 13 11 9 15 15 H 1.48501 * 109.47497 * 210.00047 * 13 11 9 16 16 H 1.48509 * 109.47173 * 330.00096 * 13 11 9 17 17 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 19 19 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 20 20 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 21 21 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 22 22 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 23 23 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 24 24 H 1.08996 * 109.47620 * 300.00339 * 7 6 5 25 25 H 1.08997 * 109.46860 * 60.00543 * 7 6 5 26 26 H 1.09004 * 109.47485 * 300.00390 * 8 7 6 27 27 H 1.08997 * 109.46836 * 60.00610 * 8 7 6 28 28 H 0.97002 * 120.00157 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 6 5.8387 -1.0681 1.4421 8 6 7.2822 -1.5751 1.4422 9 6 7.7560 -1.7419 2.8630 10 1 7.0936 -1.5099 3.6838 11 6 9.0351 -2.1907 3.1150 12 7 9.8419 -2.4727 2.1154 13 14 9.6222 -2.3981 4.8762 14 1 9.3144 -3.7742 5.3417 15 1 11.0883 -2.1704 4.9394 16 1 8.9305 -1.4144 5.7476 17 16 2.4856 -1.4020 -0.0006 18 1 -0.3633 0.0000 1.0276 19 1 -0.3633 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5139 21 1 4.2532 1.7001 0.0038 22 1 5.4058 -1.8594 -0.5143 23 1 5.9950 -0.1798 -0.5142 24 1 5.7904 -0.1081 1.9560 25 1 5.2013 -1.7877 1.9559 26 1 7.3302 -2.5353 0.9285 27 1 7.9199 -0.8559 0.9283 28 1 10.7419 -2.7881 2.2927 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066165.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:11 Heat of formation + Delta-G solvation = -4.404795 kcal Electronic energy + Delta-G solvation = -11163.378843 eV Core-core repulsion = 9111.387504 eV Total energy + Delta-G solvation = -2051.991339 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.65260 -36.74338 -34.70541 -32.71978 -30.47206 -27.62454 -25.40522 -24.17245 -22.09258 -20.24411 -18.99252 -18.40935 -16.59144 -16.20549 -15.85631 -15.61316 -14.81657 -14.42644 -14.23086 -13.87690 -13.36939 -13.35180 -13.02724 -12.78638 -12.55399 -12.41625 -12.20121 -11.51024 -11.43123 -11.25287 -10.58554 -10.56337 -10.15286 -9.64061 -8.21204 -6.32192 -0.23319 0.39785 0.80693 1.39263 1.40332 1.51546 1.84912 2.40194 3.11897 3.29608 3.92633 4.09822 4.20056 4.41631 4.54770 4.66190 4.69950 4.77698 5.04632 5.05161 5.12475 5.19213 5.30246 5.50438 5.72716 5.84153 6.24036 6.76775 6.84322 7.36971 8.90393 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.066982 B = 0.005495 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.919313 B = 5094.063751 C = 5182.600642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.033 3.967 3 N -0.501 5.501 4 C 0.018 3.982 5 C -0.217 4.217 6 C -0.036 4.036 7 C -0.089 4.089 8 C 0.024 3.976 9 C -0.546 4.546 10 H 0.057 0.943 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.265 1.265 17 S 0.130 5.870 18 H 0.098 0.902 19 H 0.093 0.907 20 H 0.101 0.899 21 H 0.181 0.819 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.046 0.954 26 H -0.004 1.004 27 H -0.003 1.003 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 2.773 -4.592 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.245 4.245 3 N -0.216 5.216 4 C -0.132 4.132 5 C -0.338 4.338 6 C -0.076 4.076 7 C -0.127 4.127 8 C -0.013 4.013 9 C -0.584 4.584 10 H 0.075 0.925 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.788 3.212 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.190 1.190 17 S 0.384 5.616 18 H 0.116 0.884 19 H 0.112 0.888 20 H 0.120 0.880 21 H 0.198 0.802 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.270 2.176 -4.639 18.014 hybrid contribution 1.493 0.578 0.741 1.764 sum -15.777 2.754 -3.898 16.483 Atomic orbital electron populations 1.20610 0.82501 1.05381 1.05028 1.27715 1.03297 0.90670 1.02791 1.66311 1.05104 1.32700 1.17502 1.21875 0.91372 0.96339 1.03616 1.26107 1.00516 0.96561 1.10603 1.20064 0.87906 1.01652 0.97980 1.21438 0.96683 1.00054 0.94551 1.19018 0.91914 0.94811 0.95552 1.21696 0.98610 1.44239 0.93817 0.92515 1.25956 0.97027 0.95010 1.01735 1.70082 1.07837 1.46228 1.33054 0.85476 0.77425 0.78855 0.79478 1.19684 1.20583 1.18951 1.83844 0.97067 1.12167 1.68492 0.88380 0.88789 0.88003 0.80193 0.90713 0.89465 0.93188 0.93471 0.98603 0.98440 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.46 71.24 0.75 -0.36 15 2 C 0.03 0.79 7.39 88.52 0.65 1.45 15 3 N -0.50 -14.73 10.54 -191.44 -2.02 -16.75 15 4 C 0.02 0.53 11.25 83.66 0.94 1.47 15 5 C -0.22 -6.62 5.85 24.64 0.14 -6.48 15 6 C -0.04 -1.22 5.75 29.85 0.17 -1.05 15 7 C -0.09 -3.69 5.14 30.60 0.16 -3.53 15 8 C 0.02 1.27 4.97 29.85 0.15 1.42 15 9 C -0.55 -31.43 9.11 25.60 0.23 -31.20 15 10 H 0.06 3.16 7.74 -2.91 -0.02 3.14 15 11 C 0.00 0.03 5.46 84.66 0.46 0.49 15 12 N -0.93 -56.82 13.29 21.45 0.28 -56.53 15 13 Si 0.96 44.56 29.54 68.60 2.03 46.58 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 17 S 0.13 3.30 23.18 -56.49 -1.31 1.99 15 18 H 0.10 1.20 8.14 -2.39 -0.02 1.18 15 19 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.10 1.02 8.14 -2.39 -0.02 1.00 15 21 H 0.18 4.91 8.06 -2.91 -0.02 4.88 15 22 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.09 2.82 8.14 -2.38 -0.02 2.80 15 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 15 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 Total: -1.00 -66.12 260.63 3.77 -62.35 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.13 Total: 0.13 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.66 Total: -37.78 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.73 Total: -73.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.31 Total: 1.99 kcal Total: -66.12 3.77 -62.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066165.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.943 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds