Wall clock time and date at job start Sun Mar 29 2020 21:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50700 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.30271 * 126.28485 * 89.97509 * 4 3 2 6 6 N 1.28667 * 109.38447 * 179.97438 * 5 4 3 7 7 C 1.30269 * 109.37908 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.28137 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 90.02583 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 O 1.34365 * 126.28030 * 270.26284 * 4 3 2 19 19 H 1.09000 * 109.46783 * 299.99937 * 1 2 3 20 20 H 1.08993 * 109.47150 * 59.99764 * 1 2 3 21 21 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47241 * 240.00210 * 2 1 3 23 23 H 1.09006 * 109.47335 * 119.99957 * 2 1 3 24 24 H 1.08996 * 109.46866 * 59.99980 * 3 2 1 25 25 H 1.08993 * 109.47275 * 300.00159 * 3 2 1 26 26 H 1.09002 * 109.47152 * 330.02355 * 8 7 6 27 27 H 1.09001 * 109.46980 * 210.02455 * 8 7 6 28 28 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 29 29 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 30 30 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3184 1.4419 -1.0491 6 7 5.5493 1.4427 -0.6746 7 6 5.6051 1.4433 0.6269 8 6 6.8571 1.4437 1.4659 9 6 7.2802 2.8864 1.7497 10 6 8.5318 2.8868 2.5891 11 1 8.9807 1.9516 2.8897 12 6 9.1044 4.0810 2.9725 13 7 10.1963 4.0814 3.7055 14 14 8.3283 5.6985 2.4519 15 1 7.3432 6.1274 3.4770 16 1 9.3847 6.7335 2.3168 17 1 7.6403 5.5204 1.1480 18 8 4.3416 1.4377 1.0841 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 7.6545 0.9300 0.9288 27 1 6.6636 0.9299 2.4075 28 1 7.4737 3.4002 0.8080 29 1 6.4829 3.4000 2.2866 30 1 10.5993 4.9216 3.9748 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253977083.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:58 Heat of formation + Delta-G solvation = 9.301995 kcal Electronic energy + Delta-G solvation = -13249.801724 eV Core-core repulsion = 10853.370547 eV Total energy + Delta-G solvation = -2396.431177 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.88554 -35.81550 -35.74280 -34.34288 -32.18754 -30.35442 -27.66322 -25.69337 -22.90286 -22.50887 -21.46034 -20.65883 -17.21867 -16.92257 -16.57047 -15.49198 -15.11009 -14.39775 -13.92148 -13.66420 -13.44336 -12.75586 -12.53770 -12.21364 -12.08638 -11.79074 -11.61153 -11.51187 -11.16995 -11.08290 -10.73592 -10.44032 -10.22946 -9.88810 -9.38092 -9.03223 -8.63948 -6.14579 -4.15222 1.47407 2.56920 2.70692 3.25721 3.33951 3.38647 4.05475 4.37329 4.57005 4.64282 4.81185 4.95693 5.17128 5.19907 5.31198 5.44037 5.54135 5.64927 5.78050 5.85164 5.91879 5.96122 6.03403 6.07298 6.44407 7.00707 7.15298 7.60471 8.37464 8.64253 8.87186 9.46114 10.98055 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056449 B = 0.006010 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.901930 B = 4657.656677 C = 4775.842699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.019 4.019 4 C 0.138 3.862 5 N -0.289 5.289 6 N -0.303 5.303 7 C 0.192 3.808 8 C -0.016 4.016 9 C -0.008 4.008 10 C -0.526 4.526 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.265 1.265 18 O -0.226 6.226 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.469 -5.840 -5.160 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.058 4.058 4 C -0.073 4.073 5 N -0.136 5.136 6 N -0.149 5.149 7 C -0.018 4.018 8 C -0.055 4.055 9 C -0.046 4.046 10 C -0.564 4.564 11 H 0.096 0.904 12 C -0.129 4.129 13 N -0.535 5.535 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.190 1.190 18 O -0.106 6.106 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.943 -5.725 -6.316 18.967 hybrid contribution -0.612 0.984 1.013 1.539 sum -17.555 -4.741 -5.303 18.941 Atomic orbital electron populations 1.21747 0.94529 1.02257 1.02232 1.21555 0.96527 0.94719 1.03315 1.20159 0.80619 0.99574 1.05412 1.27824 0.97409 1.01904 0.80205 1.74283 0.96466 1.16861 1.25961 1.74407 1.11528 1.19264 1.09662 1.28940 0.85326 0.95765 0.91803 1.20506 0.85238 1.02934 0.96774 1.19628 0.97520 0.89683 0.97793 1.20936 1.08222 0.94981 1.32264 0.90379 1.24943 0.94573 0.99097 0.94318 1.69890 1.19908 1.27156 1.36524 0.86822 0.79333 0.83676 0.79815 1.20143 1.21015 1.19004 1.84803 1.17965 1.69627 1.38156 0.92321 0.92259 0.92160 0.90967 0.91333 0.88709 0.87484 0.87437 0.89002 0.95464 0.96524 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 3 C -0.02 -0.19 5.84 -27.88 -0.16 -0.35 16 4 C 0.14 2.16 7.73 -12.94 -0.10 2.06 16 5 N -0.29 -5.36 12.22 32.55 0.40 -4.96 16 6 N -0.30 -6.20 12.22 32.55 0.40 -5.80 16 7 C 0.19 3.72 7.73 -12.94 -0.10 3.62 16 8 C -0.02 -0.31 5.78 -27.88 -0.16 -0.47 16 9 C -0.01 -0.19 4.02 -27.88 -0.11 -0.30 16 10 C -0.53 -14.52 9.66 -34.44 -0.33 -14.85 16 11 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 14 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 18 O -0.23 -4.01 10.87 5.37 0.06 -3.95 16 19 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 20 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 21 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 27 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 29 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -31.78 263.92 -4.08 -35.86 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -4.16 Total: -5.65 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.86 Total: -10.10 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 1.57 Total: -37.04 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.06 Total: -3.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.78 -4.08 -35.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253977083.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.165 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds