Wall clock time and date at job start Sun Mar 29 2020 21:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50700 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.30271 * 126.28485 * 89.97509 * 4 3 2 6 6 N 1.28667 * 109.38447 * 179.97438 * 5 4 3 7 7 C 1.30269 * 109.37908 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.28137 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46912 * 90.02583 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 O 1.34365 * 126.28030 * 270.26284 * 4 3 2 19 19 H 1.09000 * 109.46783 * 299.99937 * 1 2 3 20 20 H 1.08993 * 109.47150 * 59.99764 * 1 2 3 21 21 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47241 * 240.00210 * 2 1 3 23 23 H 1.09006 * 109.47335 * 119.99957 * 2 1 3 24 24 H 1.08996 * 109.46866 * 59.99980 * 3 2 1 25 25 H 1.08993 * 109.47275 * 300.00159 * 3 2 1 26 26 H 1.09002 * 109.47152 * 330.02355 * 8 7 6 27 27 H 1.09001 * 109.46980 * 210.02455 * 8 7 6 28 28 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 29 29 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 30 30 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3184 1.4419 -1.0491 6 7 5.5493 1.4427 -0.6746 7 6 5.6051 1.4433 0.6269 8 6 6.8571 1.4437 1.4659 9 6 7.2802 2.8864 1.7497 10 6 8.5318 2.8868 2.5891 11 1 8.9807 1.9516 2.8897 12 6 9.1044 4.0810 2.9725 13 7 10.1963 4.0814 3.7055 14 14 8.3283 5.6985 2.4519 15 1 7.3432 6.1274 3.4770 16 1 9.3847 6.7335 2.3168 17 1 7.6403 5.5204 1.1480 18 8 4.3416 1.4377 1.0841 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 7.6545 0.9300 0.9288 27 1 6.6636 0.9299 2.4075 28 1 7.4737 3.4002 0.8080 29 1 6.4829 3.4000 2.2866 30 1 10.5993 4.9216 3.9748 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253977083.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:58 Heat of formation + Delta-G solvation = -14.749419 kcal Electronic energy + Delta-G solvation = -13250.844671 eV Core-core repulsion = 10853.370547 eV Total energy + Delta-G solvation = -2397.474124 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.27979 -37.22629 -36.74989 -35.95797 -34.08497 -31.72675 -28.93032 -27.26235 -24.25691 -23.89759 -22.42825 -22.31625 -19.18087 -18.33634 -18.02588 -16.47758 -16.35481 -16.08001 -15.47567 -15.12679 -14.76415 -14.30474 -13.64752 -13.51164 -13.19665 -13.07299 -13.04065 -12.77641 -12.51306 -12.20462 -12.08801 -11.99985 -11.78303 -11.64401 -11.50051 -10.81203 -10.46161 -8.33420 -6.38643 0.12056 1.25491 1.29789 1.32290 1.35666 1.45884 2.31846 2.83613 3.01679 3.40424 3.81364 3.94678 4.15267 4.18838 4.28030 4.34504 4.49080 4.61158 4.69929 4.75599 4.80665 4.88978 5.15878 5.18167 5.23103 5.29183 5.42574 5.52751 6.18768 6.68167 7.23907 7.26245 8.82362 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056449 B = 0.006010 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.901930 B = 4657.656677 C = 4775.842699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.021 4.021 4 C 0.161 3.839 5 N -0.321 5.321 6 N -0.325 5.325 7 C 0.182 3.818 8 C -0.006 4.006 9 C -0.002 4.002 10 C -0.532 4.532 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.941 5.941 14 Si 0.940 3.060 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.259 1.259 18 O -0.229 6.229 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.018 0.982 29 H 0.022 0.978 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.004 -5.356 -5.537 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.059 4.059 4 C -0.051 4.051 5 N -0.167 5.167 6 N -0.171 5.171 7 C -0.030 4.030 8 C -0.044 4.044 9 C -0.041 4.041 10 C -0.570 4.570 11 H 0.070 0.930 12 C -0.182 4.182 13 N -0.581 5.581 14 Si 0.764 3.236 15 H -0.188 1.188 16 H -0.205 1.205 17 H -0.184 1.184 18 O -0.109 6.109 19 H 0.086 0.914 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.136 0.864 25 H 0.145 0.855 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.496 -5.254 -6.712 21.278 hybrid contribution 0.112 0.744 1.126 1.354 sum -19.384 -4.511 -5.586 20.671 Atomic orbital electron populations 1.21722 0.92402 1.02989 1.03160 1.21536 0.98213 0.93399 1.02595 1.20625 0.76693 1.01061 1.07516 1.28997 0.99052 0.98078 0.78949 1.74240 0.96153 1.19192 1.27076 1.74344 1.12907 1.19590 1.10264 1.28627 0.85812 0.97031 0.91504 1.20256 0.85849 1.00528 0.97806 1.19473 0.95787 0.92399 0.96428 1.21241 1.09460 0.94034 1.32238 0.93026 1.25810 0.95061 1.02932 0.94429 1.70017 1.21612 1.28299 1.38202 0.85810 0.78732 0.79240 0.79820 1.18781 1.20522 1.18366 1.84816 1.17572 1.69748 1.38800 0.91362 0.91372 0.91597 0.91964 0.91910 0.86351 0.85549 0.87084 0.87441 0.96336 0.96010 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 3 C -0.02 -0.35 5.84 29.85 0.17 -0.18 16 4 C 0.16 4.71 7.73 88.34 0.68 5.39 16 5 N -0.32 -11.54 12.22 -165.50 -2.02 -13.56 16 6 N -0.33 -13.10 12.22 -165.50 -2.02 -15.13 16 7 C 0.18 6.85 7.73 88.34 0.68 7.54 16 8 C -0.01 -0.23 5.78 29.85 0.17 -0.05 16 9 C 0.00 -0.11 4.02 29.85 0.12 0.01 16 10 C -0.53 -29.58 9.66 25.60 0.25 -29.33 16 11 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 12 C 0.02 0.91 5.47 84.65 0.46 1.38 16 13 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 14 Si 0.94 44.05 27.47 68.60 1.88 45.94 16 15 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 18 O -0.23 -7.73 10.87 -3.71 -0.04 -7.77 16 19 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 20 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 21 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 27 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 29 H 0.02 0.98 7.57 -2.39 -0.02 0.97 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.05 263.92 2.60 -65.45 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: 1.06 Total: -0.21 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 3.44 Total: -17.46 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.75 Total: -85.94 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.04 Total: -7.77 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Total: -68.05 2.60 -65.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253977083.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.700 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds