Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99829 * 2 1 4 4 H 1.48495 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47157 * 299.99929 * 3 2 1 6 6 H 1.48500 * 109.46856 * 59.99793 * 3 2 1 7 7 C 1.38817 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99486 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99853 * 179.97438 * 9 7 2 11 11 H 1.09002 * 108.91433 * 35.00211 * 10 9 7 12 12 C 1.52875 * 108.93219 * 153.69706 * 10 9 7 13 13 C 1.53057 * 109.10367 * 184.64240 * 12 10 9 14 14 C 1.51844 * 109.08535 * 31.31045 * 13 12 10 15 15 C 1.50483 * 112.83698 * 275.25115 * 14 13 12 16 16 N 1.44462 * 112.35107 * 15.42574 * 15 14 13 17 17 C 1.46934 * 113.45945 * 298.26223 * 16 15 14 18 18 C 1.51488 * 111.83187 * 48.74863 * 17 16 15 19 19 C 1.47039 * 117.72866 * 67.25908 * 16 15 14 20 20 H 0.96997 * 120.00480 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00369 * 0.02562 * 9 7 2 22 22 H 1.08994 * 109.53303 * 304.53264 * 12 10 9 23 23 H 1.09001 * 109.53448 * 64.68397 * 12 10 9 24 24 H 1.09002 * 108.14102 * 148.76517 * 13 12 10 25 25 H 1.09002 * 108.97321 * 35.61572 * 14 13 12 26 26 H 1.09002 * 108.96954 * 154.31400 * 14 13 12 27 27 H 1.08994 * 108.87776 * 254.75414 * 15 14 13 28 28 H 1.09004 * 109.06413 * 136.21966 * 15 14 13 29 29 H 1.09000 * 109.00925 * 288.14260 * 17 16 15 30 30 H 1.09005 * 109.00941 * 169.35485 * 17 16 15 31 31 H 1.08996 * 108.71292 * 246.24527 * 18 17 16 32 32 H 1.09007 * 108.71116 * 128.22405 * 18 17 16 33 33 H 1.09005 * 110.39606 * 204.50874 * 19 16 15 34 34 H 1.08997 * 108.63693 * 84.78490 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9663 -3.5404 0.5920 12 6 1.1835 -4.7345 0.6413 13 6 1.9868 -6.0329 0.7490 14 6 3.4539 -5.6943 0.9449 15 6 4.1731 -5.4407 -0.3524 16 7 3.2620 -5.2233 -1.4522 17 6 2.3961 -6.3771 -1.7312 18 6 1.7424 -6.9084 -0.4721 19 6 2.4419 -4.0031 -1.4303 20 1 -0.4851 0.8400 -0.0004 21 1 0.3556 -2.3881 -0.0002 22 1 0.8777 -4.4116 1.6364 23 1 0.3002 -4.9013 0.0248 24 1 1.6416 -6.5735 1.6303 25 1 3.5317 -4.7982 1.5607 26 1 3.9424 -6.5207 1.4612 27 1 4.8024 -6.3008 -0.5807 28 1 4.8079 -4.5615 -0.2416 29 1 2.9941 -7.1691 -2.1820 30 1 1.6195 -6.0763 -2.4346 31 1 2.1315 -7.9064 -0.2705 32 1 0.6679 -6.9820 -0.6402 33 1 1.5366 -4.1432 -2.0211 34 1 3.0237 -3.1847 -1.8543 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254834124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = 15.643494 kcal Electronic energy + Delta-G solvation = -14799.558730 eV Core-core repulsion = 12539.235636 eV Total energy + Delta-G solvation = -2260.323094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27066 -34.80036 -33.12814 -31.76887 -31.14867 -28.66164 -24.86571 -24.43372 -22.99395 -22.47641 -19.43337 -17.77643 -17.17354 -15.96188 -15.87123 -14.94371 -14.25594 -13.47521 -13.33814 -12.99149 -12.80733 -12.65790 -12.24158 -12.10108 -11.97663 -11.41801 -10.91459 -10.79225 -10.57124 -10.32597 -10.17916 -10.05038 -9.83531 -9.70823 -9.52290 -8.92909 -7.77319 -6.84714 -5.74448 -3.02779 3.44548 3.50410 3.52468 4.37607 4.61808 4.90796 4.93468 5.08844 5.38018 5.48095 5.50119 5.58527 5.72313 5.77504 5.87420 5.88826 5.99164 6.08264 6.14118 6.21470 6.29904 6.37838 6.47843 6.52789 6.54095 6.73015 6.90686 7.08789 7.60186 7.72123 7.84072 8.44373 9.55214 10.13304 10.48225 11.48368 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.051481 B = 0.008586 C = 0.008287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.756214 B = 3260.291258 C = 3377.950835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.146 3.854 11 H 0.052 0.948 12 C -0.120 4.120 13 C -0.078 4.078 14 C -0.151 4.151 15 C 0.085 3.915 16 N -0.563 5.563 17 C 0.065 3.935 18 C -0.140 4.140 19 C 0.055 3.945 20 H 0.254 0.746 21 H 0.382 0.618 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -13.339 -0.306 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.367 5.367 10 C 0.035 3.965 11 H 0.070 0.930 12 C -0.158 4.158 13 C -0.098 4.098 14 C -0.190 4.190 15 C -0.044 4.044 16 N -0.286 5.286 17 C -0.063 4.063 18 C -0.180 4.180 19 C -0.074 4.074 20 H 0.064 0.936 21 H 0.216 0.784 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.287 -13.116 -0.641 14.156 hybrid contribution -0.466 0.866 0.734 1.227 sum 4.820 -12.250 0.092 13.165 Atomic orbital electron populations 1.69673 1.05091 1.25449 1.58029 1.24736 0.95504 0.97643 1.03202 0.86139 0.78819 0.84255 0.77146 1.20563 1.21887 1.21965 1.19288 0.90961 0.84131 1.42236 0.91218 1.42451 1.05733 0.99791 1.88760 1.20880 0.95008 0.86429 0.94188 0.92994 1.21948 0.98361 0.94294 1.01234 1.20525 0.95435 0.96422 0.97425 1.21647 0.95747 1.01746 0.99882 1.20795 0.94399 1.01265 0.87900 1.59610 1.23005 1.03424 1.42518 1.21794 0.95366 0.93250 0.95900 1.21655 1.01079 0.98861 0.96356 1.22771 0.95562 0.89910 0.99171 0.93631 0.78427 0.91822 0.92368 0.92084 0.91089 0.92809 0.91869 0.91183 0.92073 0.91425 0.92763 0.92117 0.91792 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.23 -6.58 9.89 -15.06 -0.15 -6.72 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.43 5.07 -53.92 -0.27 -18.70 16 10 C 0.15 2.95 2.28 -68.44 -0.16 2.79 16 11 H 0.05 1.10 5.16 -51.93 -0.27 0.83 16 12 C -0.12 -2.09 5.04 -26.77 -0.13 -2.23 16 13 C -0.08 -1.12 2.82 -91.58 -0.26 -1.38 16 14 C -0.15 -2.11 5.05 -28.58 -0.14 -2.26 16 15 C 0.09 1.23 5.37 -6.39 -0.03 1.19 16 16 N -0.56 -8.97 4.62 -239.61 -1.11 -10.07 16 17 C 0.07 0.89 5.92 -4.57 -0.03 0.87 16 18 C -0.14 -1.80 5.34 -27.90 -0.15 -1.95 16 19 C 0.05 1.04 5.55 -4.19 -0.02 1.02 16 20 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.38 10.34 7.79 -40.82 -0.32 10.02 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.06 1.01 7.64 -51.93 -0.40 0.62 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.10 6.32 -51.93 -0.33 0.77 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.05 8.05 -51.93 -0.42 0.64 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.93 7.25 -51.93 -0.38 0.56 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 33 H 0.06 1.23 7.17 -51.93 -0.37 0.86 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 256.73 15.07 3.87 3.87 Total: -1.00 -29.52 256.73 -8.37 -37.90 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.39 Total: 6.32 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.17 Total: -9.20 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.66 Total: -56.51 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.52 -8.37 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254834124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.541 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds