Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99829 * 2 1 4 4 H 1.48495 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47157 * 299.99929 * 3 2 1 6 6 H 1.48500 * 109.46856 * 59.99793 * 3 2 1 7 7 C 1.38817 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99486 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99853 * 179.97438 * 9 7 2 11 11 H 1.09002 * 108.91433 * 35.00211 * 10 9 7 12 12 C 1.52875 * 108.93219 * 153.69706 * 10 9 7 13 13 C 1.53057 * 109.10367 * 184.64240 * 12 10 9 14 14 C 1.51844 * 109.08535 * 31.31045 * 13 12 10 15 15 C 1.50483 * 112.83698 * 275.25115 * 14 13 12 16 16 N 1.44462 * 112.35107 * 15.42574 * 15 14 13 17 17 C 1.46934 * 113.45945 * 298.26223 * 16 15 14 18 18 C 1.51488 * 111.83187 * 48.74863 * 17 16 15 19 19 C 1.47039 * 117.72866 * 67.25908 * 16 15 14 20 20 H 0.96997 * 120.00480 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00369 * 0.02562 * 9 7 2 22 22 H 1.08994 * 109.53303 * 304.53264 * 12 10 9 23 23 H 1.09001 * 109.53448 * 64.68397 * 12 10 9 24 24 H 1.09002 * 108.14102 * 148.76517 * 13 12 10 25 25 H 1.09002 * 108.97321 * 35.61572 * 14 13 12 26 26 H 1.09002 * 108.96954 * 154.31400 * 14 13 12 27 27 H 1.08994 * 108.87776 * 254.75414 * 15 14 13 28 28 H 1.09004 * 109.06413 * 136.21966 * 15 14 13 29 29 H 1.09000 * 109.00925 * 288.14260 * 17 16 15 30 30 H 1.09005 * 109.00941 * 169.35485 * 17 16 15 31 31 H 1.08996 * 108.71292 * 246.24527 * 18 17 16 32 32 H 1.09007 * 108.71116 * 128.22405 * 18 17 16 33 33 H 1.09005 * 110.39606 * 204.50874 * 19 16 15 34 34 H 1.08997 * 108.63693 * 84.78490 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9663 -3.5404 0.5920 12 6 1.1835 -4.7345 0.6413 13 6 1.9868 -6.0329 0.7490 14 6 3.4539 -5.6943 0.9449 15 6 4.1731 -5.4407 -0.3524 16 7 3.2620 -5.2233 -1.4522 17 6 2.3961 -6.3771 -1.7312 18 6 1.7424 -6.9084 -0.4721 19 6 2.4419 -4.0031 -1.4303 20 1 -0.4851 0.8400 -0.0004 21 1 0.3556 -2.3881 -0.0002 22 1 0.8777 -4.4116 1.6364 23 1 0.3002 -4.9013 0.0248 24 1 1.6416 -6.5735 1.6303 25 1 3.5317 -4.7982 1.5607 26 1 3.9424 -6.5207 1.4612 27 1 4.8024 -6.3008 -0.5807 28 1 4.8079 -4.5615 -0.2416 29 1 2.9941 -7.1691 -2.1820 30 1 1.6195 -6.0763 -2.4346 31 1 2.1315 -7.9064 -0.2705 32 1 0.6679 -6.9820 -0.6402 33 1 1.5366 -4.1432 -2.0211 34 1 3.0237 -3.1847 -1.8543 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254834124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = -4.493885 kcal Electronic energy + Delta-G solvation = -14800.431953 eV Core-core repulsion = 12539.235636 eV Total energy + Delta-G solvation = -2261.196317 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.55855 -36.63946 -34.41959 -33.67825 -32.26817 -30.48686 -26.34177 -26.16496 -24.20362 -24.03842 -20.97228 -19.40176 -18.76760 -17.36603 -17.28600 -16.36437 -15.97156 -15.30071 -14.82693 -14.56314 -14.14234 -13.87113 -13.67320 -13.52161 -13.16050 -13.05987 -12.91262 -12.51041 -12.14144 -11.93693 -11.80960 -11.61216 -11.26038 -11.10307 -10.97162 -10.90799 -9.31783 -8.69896 -7.95699 -5.23995 1.45262 1.45929 1.56023 2.54151 3.11108 3.37501 3.68403 3.72176 3.93051 4.16314 4.29252 4.32699 4.35485 4.42542 4.53702 4.60767 4.63526 4.70681 4.91699 5.04348 5.12302 5.14950 5.20730 5.27223 5.29878 5.37333 5.42225 5.48490 5.58072 6.23651 6.33263 6.58515 7.32135 8.07786 8.31576 9.27944 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.051481 B = 0.008586 C = 0.008287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.756214 B = 3260.291258 C = 3377.950835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.739 5.739 10 C 0.145 3.855 11 H 0.044 0.956 12 C -0.114 4.114 13 C -0.075 4.075 14 C -0.148 4.148 15 C 0.081 3.919 16 N -0.567 5.567 17 C 0.062 3.938 18 C -0.136 4.136 19 C 0.070 3.930 20 H 0.250 0.750 21 H 0.371 0.629 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -15.216 -0.237 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.036 3.964 11 H 0.061 0.939 12 C -0.152 4.152 13 C -0.094 4.094 14 C -0.188 4.188 15 C -0.047 4.047 16 N -0.289 5.289 17 C -0.066 4.066 18 C -0.175 4.175 19 C -0.059 4.059 20 H 0.059 0.941 21 H 0.202 0.798 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.508 -15.042 -0.574 16.399 hybrid contribution -0.798 1.367 0.715 1.737 sum 5.710 -13.674 0.141 14.820 Atomic orbital electron populations 1.69822 1.06549 1.25898 1.59826 1.25536 0.96385 1.00975 1.03972 0.85109 0.78215 0.79998 0.76700 1.19185 1.21981 1.22010 1.19597 0.91164 0.85305 1.40633 0.91134 1.42665 1.05350 1.01058 1.88835 1.21095 0.94695 0.85369 0.95197 0.93862 1.21875 0.98268 0.95210 0.99867 1.20538 0.94951 0.94761 0.99198 1.21602 0.95781 1.01918 0.99456 1.20913 0.94186 1.01851 0.87764 1.59589 1.22966 1.02989 1.43369 1.21913 0.95426 0.92752 0.96525 1.21619 1.01480 0.99605 0.94842 1.22385 0.95182 0.90899 0.97484 0.94068 0.79790 0.93247 0.92605 0.90294 0.93282 0.89863 0.89002 0.92620 0.89658 0.91978 0.90035 0.91737 0.92388 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 7 C -0.24 -13.41 9.89 84.04 0.83 -12.58 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -38.52 5.07 -324.50 -1.65 -40.16 16 10 C 0.15 5.96 2.28 44.66 0.10 6.06 16 11 H 0.04 1.86 5.16 -2.39 -0.01 1.85 16 12 C -0.11 -3.91 5.04 30.57 0.15 -3.75 16 13 C -0.07 -1.94 2.82 -11.41 -0.03 -1.97 16 14 C -0.15 -3.77 5.05 29.40 0.15 -3.62 16 15 C 0.08 2.14 5.37 85.94 0.46 2.61 16 16 N -0.57 -17.07 4.62 -912.00 -4.22 -21.29 16 17 C 0.06 1.50 5.92 85.80 0.51 2.01 16 18 C -0.14 -2.99 5.34 29.84 0.16 -2.84 16 19 C 0.07 2.68 5.55 85.99 0.48 3.15 16 20 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 21 H 0.37 20.73 7.79 -92.71 -0.72 20.01 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 1.92 7.64 -2.39 -0.02 1.90 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.46 6.32 -2.39 -0.02 1.45 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.62 8.05 -2.38 -0.02 1.60 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.58 7.25 -2.38 -0.02 1.56 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.40 7.85 -2.38 -0.02 1.38 16 33 H 0.06 2.25 7.17 -2.38 -0.02 2.23 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -63.73 256.73 0.07 -63.66 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.35 Total: 23.72 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.28 Total: -14.95 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -5.58 Total: -121.62 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -63.73 0.07 -63.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254834124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.165 kcal (2) G-P(sol) polarization free energy of solvation -63.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds