Wall clock time and date at job start Sun Mar 29 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48493 * 109.46932 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47005 * 29.99978 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99714 * 3 2 1 7 7 C 1.38816 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99926 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99769 * 180.02562 * 9 7 2 11 11 H 1.08997 * 108.91192 * 323.69970 * 10 9 7 12 12 C 1.52869 * 108.93402 * 205.00325 * 10 9 7 13 13 C 1.53048 * 109.10631 * 175.35742 * 12 10 9 14 14 C 1.52226 * 110.31443 * 93.06541 * 13 12 10 15 15 C 1.50091 * 114.11785 * 288.56670 * 14 13 12 16 16 N 1.46937 * 111.58119 * 352.41534 * 15 14 13 17 17 C 1.44465 * 113.46044 * 311.42098 * 16 15 14 18 18 C 1.51835 * 109.08291 * 328.69042 * 13 12 10 19 19 C 1.47124 * 110.01202 * 84.24757 * 16 15 14 20 20 H 0.97002 * 119.99356 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00421 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.53659 * 55.46324 * 12 10 9 23 23 H 1.09008 * 109.59611 * 295.28414 * 12 10 9 24 24 H 1.09002 * 108.14509 * 211.23276 * 13 12 10 25 25 H 1.08998 * 108.71621 * 49.04426 * 14 13 12 26 26 H 1.08998 * 108.70949 * 167.06607 * 14 13 12 27 27 H 1.09006 * 109.00326 * 231.97793 * 15 14 13 28 28 H 1.09002 * 109.21511 * 112.99795 * 15 14 13 29 29 H 1.09003 * 108.86383 * 182.64174 * 17 16 15 30 30 H 1.08993 * 108.86477 * 301.16291 * 17 16 15 31 31 H 1.09005 * 108.97357 * 205.68664 * 18 13 12 32 32 H 1.09000 * 108.97641 * 324.38325 * 18 13 12 33 33 H 1.09005 * 109.23399 * 144.62034 * 19 16 15 34 34 H 1.08994 * 109.23882 * 25.23230 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4710 0.0000 11 1 3.5694 -3.1923 0.6108 12 6 5.4953 -2.2452 0.6106 13 6 6.2203 -3.5887 0.7193 14 6 7.0760 -3.8290 -0.5166 15 6 6.2888 -4.1308 -1.7583 16 7 4.8597 -4.3032 -1.4637 17 6 4.6043 -5.1941 -0.3556 18 6 5.1977 -4.6874 0.9485 19 6 4.1916 -2.9929 -1.4268 20 1 -0.4849 0.8401 -0.0004 21 1 3.8647 -0.3622 -0.0004 22 1 5.3886 -1.8073 1.6031 23 1 6.0700 -1.5714 -0.0250 24 1 6.8786 -3.5499 1.5872 25 1 7.6734 -2.9374 -0.7071 26 1 7.7497 -4.6626 -0.3186 27 1 6.6718 -5.0473 -2.2074 28 1 6.4089 -3.3115 -2.4672 29 1 3.5268 -5.3043 -0.2330 30 1 5.0345 -6.1697 -0.5813 31 1 5.6795 -5.5178 1.4648 32 1 4.3953 -4.2996 1.5760 33 1 3.1835 -3.0923 -1.8295 34 1 4.7534 -2.2860 -2.0372 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254834130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:49 Heat of formation + Delta-G solvation = 19.250834 kcal Electronic energy + Delta-G solvation = -14842.209129 eV Core-core repulsion = 12582.042460 eV Total energy + Delta-G solvation = -2260.166668 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.34110 -35.01502 -33.20039 -31.84963 -31.17696 -29.22497 -24.96805 -24.50715 -23.04361 -22.16057 -19.58642 -18.02623 -17.35655 -16.12481 -15.98418 -14.98995 -14.25526 -13.69831 -13.36293 -13.05060 -12.75121 -12.71427 -12.32422 -12.24246 -12.01795 -11.77215 -11.02408 -10.91290 -10.63081 -10.41485 -10.23104 -10.14584 -9.92339 -9.64375 -9.56685 -8.96965 -7.86581 -7.12795 -5.75348 -3.10474 3.38068 3.41087 3.45801 4.31872 4.60364 4.79164 4.86704 5.00366 5.32677 5.37682 5.43253 5.53007 5.57523 5.66743 5.75996 5.78445 5.86321 6.00490 6.07838 6.08906 6.23037 6.29212 6.37492 6.42459 6.44200 6.58349 6.81282 6.99853 7.55238 7.73783 8.02608 8.44019 9.22397 9.95133 10.15286 11.43092 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048041 B = 0.009366 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.697869 B = 2988.848855 C = 3136.792540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.150 3.850 11 H 0.060 0.940 12 C -0.124 4.124 13 C -0.078 4.078 14 C -0.141 4.141 15 C 0.066 3.934 16 N -0.562 5.562 17 C 0.082 3.918 18 C -0.152 4.152 19 C 0.055 3.945 20 H 0.259 0.741 21 H 0.359 0.641 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.092 -8.231 -0.348 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.393 5.393 10 C 0.040 3.960 11 H 0.078 0.922 12 C -0.162 4.162 13 C -0.097 4.097 14 C -0.180 4.180 15 C -0.062 4.062 16 N -0.284 5.284 17 C -0.047 4.047 18 C -0.191 4.191 19 C -0.074 4.074 20 H 0.069 0.931 21 H 0.192 0.808 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.625 -8.515 -0.690 16.082 hybrid contribution 0.925 1.726 0.735 2.092 sum 14.550 -6.788 0.045 16.056 Atomic orbital electron populations 1.69706 1.05080 1.25746 1.57706 1.24669 0.95216 0.97149 1.02160 0.86550 0.79157 0.85079 0.77745 1.21109 1.21809 1.20450 1.19078 0.80575 0.94658 1.42765 0.89233 1.42807 1.04003 1.01969 1.90508 1.20852 0.90830 0.89501 0.94800 0.92182 1.21981 0.96960 0.96016 1.01222 1.20509 0.96498 0.95385 0.97334 1.21409 0.98793 1.01474 0.96319 1.21537 0.87632 1.01063 0.95948 1.59628 1.10274 1.16638 1.41831 1.21094 1.00854 0.95064 0.87672 1.21930 0.99290 0.98080 0.99827 1.22737 0.99405 0.86635 0.98618 0.93111 0.80810 0.91773 0.92471 0.91974 0.92286 0.92614 0.91885 0.91448 0.90937 0.91786 0.92655 0.90905 0.90439 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.32 27.74 -169.99 -4.71 17.60 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 7 C -0.24 -6.81 10.33 -15.06 -0.16 -6.96 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.88 4.89 -53.92 -0.26 -18.14 16 10 C 0.15 2.92 2.27 -68.44 -0.16 2.77 16 11 H 0.06 1.24 5.20 -51.93 -0.27 0.97 16 12 C -0.12 -2.02 5.04 -26.77 -0.13 -2.15 16 13 C -0.08 -1.05 2.82 -91.58 -0.26 -1.31 16 14 C -0.14 -1.71 5.22 -28.57 -0.15 -1.86 16 15 C 0.07 0.87 5.92 -5.25 -0.03 0.84 16 16 N -0.56 -8.68 4.62 -239.46 -1.11 -9.79 16 17 C 0.08 1.16 5.37 -5.65 -0.03 1.13 16 18 C -0.15 -2.05 5.15 -27.85 -0.14 -2.20 16 19 C 0.05 1.01 5.55 -4.14 -0.02 0.99 16 20 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 21 H 0.36 8.47 5.64 -40.82 -0.23 8.24 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.06 0.91 7.64 -51.92 -0.40 0.52 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.88 7.30 -51.93 -0.38 0.50 16 29 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.09 6.32 -51.93 -0.33 0.76 16 33 H 0.08 1.62 8.11 -51.93 -0.42 1.20 16 34 H 0.06 1.09 7.18 -51.93 -0.37 0.72 16 LS Contribution 253.61 15.07 3.82 3.82 Total: -1.00 -30.34 253.61 -8.02 -38.36 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.35 Total: 5.65 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.18 Total: -8.76 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.60 Total: -56.68 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.34 -8.02 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254834130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.607 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds