Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48493 * 109.46932 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47005 * 29.99978 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99714 * 3 2 1 7 7 C 1.38816 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99926 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99769 * 180.02562 * 9 7 2 11 11 H 1.08997 * 108.91192 * 323.69970 * 10 9 7 12 12 C 1.52869 * 108.93402 * 205.00325 * 10 9 7 13 13 C 1.53048 * 109.10631 * 175.35742 * 12 10 9 14 14 C 1.52226 * 110.31443 * 93.06541 * 13 12 10 15 15 C 1.50091 * 114.11785 * 288.56670 * 14 13 12 16 16 N 1.46937 * 111.58119 * 352.41534 * 15 14 13 17 17 C 1.44465 * 113.46044 * 311.42098 * 16 15 14 18 18 C 1.51835 * 109.08291 * 328.69042 * 13 12 10 19 19 C 1.47124 * 110.01202 * 84.24757 * 16 15 14 20 20 H 0.97002 * 119.99356 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00421 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.53659 * 55.46324 * 12 10 9 23 23 H 1.09008 * 109.59611 * 295.28414 * 12 10 9 24 24 H 1.09002 * 108.14509 * 211.23276 * 13 12 10 25 25 H 1.08998 * 108.71621 * 49.04426 * 14 13 12 26 26 H 1.08998 * 108.70949 * 167.06607 * 14 13 12 27 27 H 1.09006 * 109.00326 * 231.97793 * 15 14 13 28 28 H 1.09002 * 109.21511 * 112.99795 * 15 14 13 29 29 H 1.09003 * 108.86383 * 182.64174 * 17 16 15 30 30 H 1.08993 * 108.86477 * 301.16291 * 17 16 15 31 31 H 1.09005 * 108.97357 * 205.68664 * 18 13 12 32 32 H 1.09000 * 108.97641 * 324.38325 * 18 13 12 33 33 H 1.09005 * 109.23399 * 144.62034 * 19 16 15 34 34 H 1.08994 * 109.23882 * 25.23230 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4710 0.0000 11 1 3.5694 -3.1923 0.6108 12 6 5.4953 -2.2452 0.6106 13 6 6.2203 -3.5887 0.7193 14 6 7.0760 -3.8290 -0.5166 15 6 6.2888 -4.1308 -1.7583 16 7 4.8597 -4.3032 -1.4637 17 6 4.6043 -5.1941 -0.3556 18 6 5.1977 -4.6874 0.9485 19 6 4.1916 -2.9929 -1.4268 20 1 -0.4849 0.8401 -0.0004 21 1 3.8647 -0.3622 -0.0004 22 1 5.3886 -1.8073 1.6031 23 1 6.0700 -1.5714 -0.0250 24 1 6.8786 -3.5499 1.5872 25 1 7.6734 -2.9374 -0.7071 26 1 7.7497 -4.6626 -0.3186 27 1 6.6718 -5.0473 -2.2074 28 1 6.4089 -3.3115 -2.4672 29 1 3.5268 -5.3043 -0.2330 30 1 5.0345 -6.1697 -0.5813 31 1 5.6795 -5.5178 1.4648 32 1 4.3953 -4.2996 1.5760 33 1 3.1835 -3.0923 -1.8295 34 1 4.7534 -2.2860 -2.0372 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254834130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = -2.209164 kcal Electronic energy + Delta-G solvation = -14843.139704 eV Core-core repulsion = 12582.042460 eV Total energy + Delta-G solvation = -2261.097244 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57416 -36.81526 -34.43755 -33.82684 -32.27643 -30.99844 -26.31600 -26.16077 -24.11079 -23.90207 -21.13549 -19.80226 -18.76598 -17.51338 -17.26031 -16.30119 -16.14037 -15.25269 -14.82063 -14.70326 -14.19483 -13.91113 -13.75289 -13.56655 -13.48417 -13.06695 -12.98317 -12.50907 -12.09588 -11.94524 -11.85983 -11.64764 -11.28400 -11.10408 -10.99712 -10.94410 -9.53663 -8.80156 -8.03323 -5.36608 1.35619 1.39570 1.46749 2.47138 3.05936 3.27793 3.56011 3.68399 3.90143 4.02072 4.25031 4.30038 4.31812 4.38295 4.52881 4.59365 4.61975 4.69125 4.88907 5.03852 5.10059 5.13985 5.19629 5.26297 5.27146 5.36526 5.38814 5.55678 5.74694 6.17876 6.33662 6.54619 7.06751 7.82470 8.02324 9.18444 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048041 B = 0.009366 C = 0.008924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.697869 B = 2988.848855 C = 3136.792540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.253 1.253 7 C -0.227 4.227 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.148 3.852 11 H 0.042 0.958 12 C -0.117 4.117 13 C -0.075 4.075 14 C -0.137 4.137 15 C 0.063 3.937 16 N -0.568 5.568 17 C 0.079 3.921 18 C -0.150 4.150 19 C 0.068 3.932 20 H 0.257 0.743 21 H 0.364 0.636 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.519 -8.421 -0.267 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.358 4.358 8 H 0.069 0.931 9 N -0.396 5.396 10 C 0.039 3.961 11 H 0.060 0.940 12 C -0.155 4.155 13 C -0.094 4.094 14 C -0.176 4.176 15 C -0.065 4.065 16 N -0.291 5.291 17 C -0.050 4.050 18 C -0.189 4.189 19 C -0.061 4.061 20 H 0.066 0.934 21 H 0.197 0.803 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.115 -8.747 -0.609 19.231 hybrid contribution -0.172 1.634 0.700 1.786 sum 16.943 -7.113 0.091 18.376 Atomic orbital electron populations 1.69897 1.07163 1.26635 1.59881 1.25520 0.96131 1.01286 1.02767 0.85368 0.78538 0.79509 0.78093 1.20393 1.22264 1.17749 1.18982 0.82625 0.93208 1.41011 0.93053 1.42820 1.02449 1.03894 1.90472 1.21074 0.92265 0.87213 0.95544 0.94002 1.21924 0.94880 0.98248 1.00489 1.20532 0.96503 0.93199 0.99193 1.21371 0.98543 1.03002 0.94682 1.21672 0.85774 1.02242 0.96763 1.59580 1.12150 1.14769 1.42553 1.21166 0.99938 0.95960 0.87909 1.21880 0.98830 0.99089 0.99087 1.22374 0.97867 0.88541 0.97328 0.93379 0.80291 0.92459 0.91576 0.89930 0.91306 0.90172 0.89806 0.91515 0.93193 0.89142 0.89927 0.93304 0.94453 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.39 13.97 21.65 0.30 -64.09 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.96 46.31 27.74 68.60 1.90 48.21 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 7 C -0.23 -13.28 10.33 84.03 0.87 -12.41 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.75 -36.01 4.89 -324.50 -1.59 -37.60 16 10 C 0.15 5.75 2.27 44.66 0.10 5.85 16 11 H 0.04 1.79 5.20 -2.39 -0.01 1.78 16 12 C -0.12 -3.58 5.04 30.57 0.15 -3.42 16 13 C -0.07 -1.77 2.82 -11.42 -0.03 -1.80 16 14 C -0.14 -2.70 5.22 29.40 0.15 -2.55 16 15 C 0.06 1.42 5.92 85.36 0.51 1.93 16 16 N -0.57 -16.76 4.62 -911.51 -4.21 -20.98 16 17 C 0.08 2.11 5.37 86.42 0.46 2.57 16 18 C -0.15 -3.71 5.15 29.87 0.15 -3.56 16 19 C 0.07 2.52 5.55 85.97 0.48 3.00 16 20 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 21 H 0.36 16.65 5.64 -92.71 -0.52 16.12 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.91 7.64 -2.38 -0.02 1.89 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.27 7.84 -2.39 -0.02 1.25 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 1.53 7.30 -2.39 -0.02 1.51 16 29 H 0.05 1.54 8.06 -2.39 -0.02 1.52 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 1.44 6.32 -2.39 -0.02 1.43 16 33 H 0.04 1.64 8.11 -2.38 -0.02 1.62 16 34 H 0.06 2.30 7.18 -2.39 -0.02 2.28 16 Total: -1.00 -67.28 253.61 0.21 -67.07 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.49 Total: 21.26 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.31 Total: -13.88 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.50 Total: -122.67 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -67.28 0.21 -67.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254834130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.863 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds