Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46903 * 2 1 4 4 H 1.08999 * 109.46909 * 54.88179 * 3 2 1 5 5 C 1.50699 * 109.47062 * 174.88000 * 3 2 1 6 6 H 1.08005 * 119.99919 * 120.00203 * 5 3 2 7 7 C 1.37875 * 120.00395 * 299.72972 * 5 3 2 8 8 N 1.31519 * 119.99722 * 0.26773 * 7 5 3 9 9 Si 1.86798 * 120.00408 * 180.27662 * 7 5 3 10 10 H 1.48506 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47407 * 119.99709 * 9 7 5 12 12 H 1.48493 * 109.47044 * 240.00095 * 9 7 5 13 13 N 1.46900 * 109.47420 * 294.88381 * 3 2 1 14 14 C 1.46900 * 111.00198 * 154.14933 * 13 3 2 15 15 C 1.50699 * 109.47099 * 185.52312 * 14 13 3 16 16 N 1.30253 * 125.61634 * 89.69153 * 15 14 13 17 17 C 1.34475 * 108.70064 * 179.83913 * 16 15 14 18 18 C 1.34331 * 107.66904 * 0.42369 * 17 16 15 19 19 O 1.33967 * 125.61986 * 270.00177 * 15 14 13 20 20 H 1.08996 * 109.47207 * 297.57948 * 1 2 3 21 21 H 1.09006 * 109.47266 * 57.58447 * 1 2 3 22 22 H 1.09003 * 109.47129 * 177.58370 * 1 2 3 23 23 H 1.08999 * 109.47322 * 240.00634 * 2 1 3 24 24 H 1.09005 * 109.47220 * 120.00111 * 2 1 3 25 25 H 0.97002 * 120.00020 * 179.97438 * 8 7 5 26 26 H 1.00903 * 110.99641 * 278.10887 * 13 3 2 27 27 H 1.09001 * 109.46765 * 305.52313 * 14 13 3 28 28 H 1.08998 * 109.46802 * 65.52697 * 14 13 3 29 29 H 1.08008 * 126.16628 * 180.17234 * 17 16 15 30 30 H 1.07994 * 126.44350 * 179.72185 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6036 1.9821 0.8406 5 6 3.5416 1.4445 0.1268 6 1 4.1484 1.8886 -0.6485 7 6 4.1406 0.8844 1.2351 8 7 3.4017 0.3436 2.1792 9 14 6.0016 0.8936 1.3959 10 1 6.5978 1.5564 0.2082 11 1 6.3888 1.6346 2.6232 12 1 6.4978 -0.5032 1.4838 13 7 1.6537 2.0985 -1.2564 14 6 1.5549 3.5538 -1.0818 15 6 1.0275 4.1770 -2.3485 16 7 -0.2286 4.3753 -2.6303 17 6 -0.3127 4.9532 -3.8416 18 6 0.9374 5.1004 -4.3108 19 8 1.7730 4.6130 -3.3726 20 1 -0.3633 0.4758 0.9109 21 1 -0.3634 0.5509 -0.8676 22 1 -0.3633 -1.0268 -0.0433 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8231 -0.0508 2.9588 26 1 2.2970 1.8661 -1.9982 27 1 0.8766 3.7756 -0.2579 28 1 2.5414 3.9608 -0.8600 29 1 -1.2217 5.2428 -4.3480 30 1 1.2197 5.5283 -5.2613 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149196.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = 16.124158 kcal Electronic energy + Delta-G solvation = -13692.243174 eV Core-core repulsion = 11296.107828 eV Total energy + Delta-G solvation = -2396.135346 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.99245 -36.36685 -34.42174 -32.90584 -31.38783 -29.61485 -26.84519 -24.72651 -22.54955 -22.28768 -20.80131 -19.56229 -17.19956 -16.72676 -16.31866 -14.95685 -14.86200 -14.42953 -13.79351 -13.25022 -12.94785 -12.63095 -12.07600 -11.91462 -11.28814 -11.18373 -11.03282 -10.92100 -10.69719 -10.25177 -10.21310 -9.66840 -9.59590 -9.13462 -8.65896 -8.43787 -7.43665 -6.05819 -4.19342 1.72051 2.96877 3.07016 3.23539 3.32446 3.35439 4.34745 4.41813 5.14782 5.19072 5.22244 5.44898 5.87177 5.97832 6.16582 6.18410 6.41190 6.54014 6.56330 6.72420 7.06125 7.19979 7.35121 7.52261 7.72558 7.96529 8.03106 8.06952 8.20803 8.50937 8.91282 9.48917 10.94844 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036210 B = 0.008258 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.092002 B = 3389.933990 C = 3995.809953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.038 0.962 5 C -0.551 4.551 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.681 5.681 14 C 0.157 3.843 15 C 0.217 3.783 16 N -0.481 5.481 17 C -0.047 4.047 18 C -0.093 4.093 19 O -0.206 6.206 20 H 0.037 0.963 21 H 0.050 0.950 22 H 0.025 0.975 23 H 0.031 0.969 24 H 0.092 0.908 25 H 0.262 0.738 26 H 0.333 0.667 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.178 0.822 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 6.460 -8.484 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.055 0.945 5 C -0.590 4.590 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.312 5.312 14 C 0.027 3.973 15 C 0.009 3.991 16 N -0.210 5.210 17 C -0.185 4.185 18 C -0.164 4.164 19 O -0.092 6.092 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.195 0.805 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.456 6.089 -7.781 10.838 hybrid contribution 2.435 0.479 -0.511 2.534 sum -2.020 6.568 -8.292 10.769 Atomic orbital electron populations 1.21725 0.98798 0.98563 1.00638 1.21491 0.92292 0.98755 1.01799 1.19210 0.93104 0.91487 0.85245 0.94451 1.21886 0.92525 1.38957 1.05660 0.92600 1.24925 0.98086 0.94794 0.95599 1.69889 1.34856 1.38033 1.09273 0.86570 0.85801 0.77814 0.78003 1.19882 1.20966 1.20896 1.60901 1.55499 1.03684 1.11100 1.20265 1.00101 0.90460 0.86489 1.26922 0.84495 0.96395 0.91254 1.70500 1.19144 1.16531 1.14846 1.23354 0.98297 1.03343 0.93526 1.24901 0.89629 1.05964 0.95949 1.84487 1.39918 1.59591 1.25206 0.94367 0.93068 0.95580 0.95006 0.88953 0.92786 0.85104 0.87678 0.92224 0.80458 0.77453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.83 37.16 0.37 -2.56 16 2 C -0.10 -2.49 5.45 -26.73 -0.15 -2.63 16 3 C 0.22 5.22 1.97 -68.86 -0.14 5.08 16 4 H 0.04 0.98 7.70 -51.93 -0.40 0.58 16 5 C -0.55 -14.40 8.47 -34.44 -0.29 -14.69 16 6 H 0.06 1.45 7.73 -52.48 -0.41 1.04 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.36 11.30 55.43 0.63 -23.73 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.26 5.62 -109.22 -0.61 -14.88 16 14 C 0.16 2.97 6.14 -4.98 -0.03 2.94 16 15 C 0.22 3.89 7.90 -12.95 -0.10 3.79 16 16 N -0.48 -8.61 11.29 -11.10 -0.13 -8.73 16 17 C -0.05 -0.65 11.89 -17.77 -0.21 -0.86 16 18 C -0.09 -1.20 12.18 29.35 0.36 -0.84 16 19 O -0.21 -3.38 10.78 5.35 0.06 -3.33 16 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 1.06 7.69 -51.93 -0.40 0.66 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 2.43 5.96 -51.93 -0.31 2.12 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.33 6.94 8.45 -39.29 -0.33 6.61 16 27 H 0.11 1.97 7.92 -51.93 -0.41 1.56 16 28 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 29 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 261.39 15.07 3.94 3.94 Total: -1.00 -28.80 261.39 -5.35 -34.16 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.93 Total: 4.96 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -0.29 Total: -8.03 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.11 Total: -47.34 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.06 Total: -3.33 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.80 -5.35 -34.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149196.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds