Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46903 * 2 1 4 4 H 1.08999 * 109.46909 * 54.88179 * 3 2 1 5 5 C 1.50699 * 109.47062 * 174.88000 * 3 2 1 6 6 H 1.08005 * 119.99919 * 120.00203 * 5 3 2 7 7 C 1.37875 * 120.00395 * 299.72972 * 5 3 2 8 8 N 1.31519 * 119.99722 * 0.26773 * 7 5 3 9 9 Si 1.86798 * 120.00408 * 180.27662 * 7 5 3 10 10 H 1.48506 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47407 * 119.99709 * 9 7 5 12 12 H 1.48493 * 109.47044 * 240.00095 * 9 7 5 13 13 N 1.46900 * 109.47420 * 294.88381 * 3 2 1 14 14 C 1.46900 * 111.00198 * 154.14933 * 13 3 2 15 15 C 1.50699 * 109.47099 * 185.52312 * 14 13 3 16 16 N 1.30253 * 125.61634 * 89.69153 * 15 14 13 17 17 C 1.34475 * 108.70064 * 179.83913 * 16 15 14 18 18 C 1.34331 * 107.66904 * 0.42369 * 17 16 15 19 19 O 1.33967 * 125.61986 * 270.00177 * 15 14 13 20 20 H 1.08996 * 109.47207 * 297.57948 * 1 2 3 21 21 H 1.09006 * 109.47266 * 57.58447 * 1 2 3 22 22 H 1.09003 * 109.47129 * 177.58370 * 1 2 3 23 23 H 1.08999 * 109.47322 * 240.00634 * 2 1 3 24 24 H 1.09005 * 109.47220 * 120.00111 * 2 1 3 25 25 H 0.97002 * 120.00020 * 179.97438 * 8 7 5 26 26 H 1.00903 * 110.99641 * 278.10887 * 13 3 2 27 27 H 1.09001 * 109.46765 * 305.52313 * 14 13 3 28 28 H 1.08998 * 109.46802 * 65.52697 * 14 13 3 29 29 H 1.08008 * 126.16628 * 180.17234 * 17 16 15 30 30 H 1.07994 * 126.44350 * 179.72185 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6036 1.9821 0.8406 5 6 3.5416 1.4445 0.1268 6 1 4.1484 1.8886 -0.6485 7 6 4.1406 0.8844 1.2351 8 7 3.4017 0.3436 2.1792 9 14 6.0016 0.8936 1.3959 10 1 6.5978 1.5564 0.2082 11 1 6.3888 1.6346 2.6232 12 1 6.4978 -0.5032 1.4838 13 7 1.6537 2.0985 -1.2564 14 6 1.5549 3.5538 -1.0818 15 6 1.0275 4.1770 -2.3485 16 7 -0.2286 4.3753 -2.6303 17 6 -0.3127 4.9532 -3.8416 18 6 0.9374 5.1004 -4.3108 19 8 1.7730 4.6130 -3.3726 20 1 -0.3633 0.4758 0.9109 21 1 -0.3634 0.5509 -0.8676 22 1 -0.3633 -1.0268 -0.0433 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8231 -0.0508 2.9588 26 1 2.2970 1.8661 -1.9982 27 1 0.8766 3.7756 -0.2579 28 1 2.5414 3.9608 -0.8600 29 1 -1.2217 5.2428 -4.3480 30 1 1.2197 5.5283 -5.2613 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149196.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = -5.346357 kcal Electronic energy + Delta-G solvation = -13693.174205 eV Core-core repulsion = 11296.107828 eV Total energy + Delta-G solvation = -2397.066377 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.19444 -38.15741 -35.67619 -34.69695 -33.21470 -31.00111 -28.59675 -26.39801 -24.36146 -23.43301 -22.14345 -21.43382 -18.79949 -18.28176 -17.60822 -16.77550 -16.08789 -16.04625 -15.56667 -14.92171 -14.34436 -14.07391 -13.69142 -13.58096 -13.12631 -13.07043 -12.77990 -12.53741 -12.28372 -12.07817 -11.53632 -11.49622 -11.48289 -11.05425 -10.47173 -9.81668 -9.19618 -8.07121 -6.28662 0.54856 1.39600 1.42912 1.52411 1.77573 1.90219 2.41334 3.12962 3.21226 3.76013 4.10323 4.23957 4.47850 4.57441 4.64319 4.77223 4.92167 4.93327 5.03174 5.16016 5.39175 5.42659 5.48934 5.60529 5.75611 6.05699 6.11339 6.28866 6.65705 6.86929 6.93846 7.42901 8.91184 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036210 B = 0.008258 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.092002 B = 3389.933990 C = 3995.809953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.224 3.776 4 H 0.011 0.989 5 C -0.563 4.563 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.675 5.675 14 C 0.164 3.836 15 C 0.190 3.810 16 N -0.503 5.503 17 C -0.066 4.066 18 C -0.071 4.071 19 O -0.218 6.218 20 H 0.033 0.967 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.263 0.737 26 H 0.333 0.667 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.212 0.788 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 7.205 -10.180 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C 0.116 3.884 4 H 0.029 0.971 5 C -0.602 4.602 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.306 5.306 14 C 0.034 3.966 15 C -0.017 4.017 16 N -0.234 5.234 17 C -0.204 4.204 18 C -0.140 4.140 19 O -0.104 6.104 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.150 0.850 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.339 6.843 -9.491 12.479 hybrid contribution 2.340 0.324 -0.090 2.364 sum -1.998 7.167 -9.581 12.131 Atomic orbital electron populations 1.21581 0.96576 0.99873 1.00445 1.21365 0.94247 0.98118 1.00281 1.18980 0.92047 0.91695 0.85705 0.97120 1.22168 0.93698 1.38709 1.05646 0.92805 1.25644 1.02132 0.94598 0.95416 1.70007 1.36432 1.38667 1.09689 0.85603 0.80911 0.77738 0.77932 1.19449 1.20711 1.20641 1.60795 1.55054 1.05157 1.09595 1.20045 0.99846 0.89097 0.87612 1.26374 0.84811 0.98766 0.91751 1.70443 1.19167 1.16882 1.16896 1.23971 1.00350 1.03539 0.92518 1.25940 0.88831 1.03135 0.96130 1.84479 1.40668 1.59724 1.25546 0.94805 0.92863 0.93531 0.95235 0.91595 0.92741 0.85039 0.88256 0.92632 0.77126 0.72430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.83 71.98 0.71 -4.56 16 2 C -0.10 -4.86 5.45 30.59 0.17 -4.70 16 3 C 0.22 10.99 1.97 44.17 0.09 11.07 16 4 H 0.01 0.59 7.70 -2.39 -0.02 0.57 16 5 C -0.56 -29.75 8.47 25.60 0.22 -29.53 16 6 H 0.05 2.80 7.73 -2.91 -0.02 2.78 16 7 C 0.02 1.21 5.29 84.65 0.45 1.66 16 8 N -0.91 -50.92 11.30 21.45 0.24 -50.68 16 9 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.68 -28.57 5.62 -499.46 -2.81 -31.38 16 14 C 0.16 6.30 6.14 85.56 0.53 6.82 16 15 C 0.19 6.70 7.90 88.34 0.70 7.40 16 16 N -0.50 -17.42 11.29 -303.83 -3.43 -20.85 16 17 C -0.07 -1.66 11.89 83.39 0.99 -0.67 16 18 C -0.07 -1.56 12.18 66.93 0.81 -0.75 16 19 O -0.22 -6.79 10.78 -3.76 -0.04 -6.83 16 20 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 2.16 7.69 -2.38 -0.02 2.14 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 3.53 5.96 -2.38 -0.01 3.52 16 25 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 26 H 0.33 13.96 8.45 -89.69 -0.76 13.20 16 27 H 0.10 3.85 7.92 -2.39 -0.02 3.83 16 28 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 29 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.26 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -61.81 261.39 1.02 -60.79 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.38 Total: 17.68 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.66 Total: -13.24 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -6.00 Total: -102.91 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.04 Total: -6.83 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -61.81 1.02 -60.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149196.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.445 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds