Wall clock time and date at job start Sun Mar 29 2020 21:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46934 * 2 1 4 4 H 1.08999 * 109.47032 * 304.99762 * 3 2 1 5 5 C 1.50697 * 109.47074 * 185.00009 * 3 2 1 6 6 H 1.08003 * 120.00027 * 240.00098 * 5 3 2 7 7 C 1.37876 * 120.00166 * 59.99618 * 5 3 2 8 8 N 1.31511 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47087 * 90.00582 * 9 7 5 11 11 H 1.48499 * 109.47364 * 210.00352 * 9 7 5 12 12 H 1.48500 * 109.47506 * 330.00350 * 9 7 5 13 13 N 1.46503 * 109.47163 * 64.99993 * 3 2 1 14 14 N 1.28716 * 125.86732 * 60.16784 * 13 3 2 15 15 N 1.28635 * 110.17719 * 180.23943 * 14 13 3 16 16 C 1.33767 * 108.88478 * 359.76336 * 15 14 13 17 17 C 1.35303 * 125.86748 * 240.00259 * 13 3 2 18 18 C 1.50701 * 126.91382 * 0.03193 * 17 13 3 19 19 N 1.46901 * 109.46921 * 274.71037 * 18 17 13 20 20 H 1.09000 * 109.47075 * 299.99826 * 1 2 3 21 21 H 1.08992 * 109.46957 * 60.00150 * 1 2 3 22 22 H 1.09000 * 109.46522 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47801 * 240.00155 * 2 1 3 24 24 H 1.09000 * 109.47483 * 119.99501 * 2 1 3 25 25 H 0.96999 * 120.00417 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.75057 * 179.97438 * 16 15 14 27 27 H 1.09002 * 109.47060 * 34.71218 * 18 17 13 28 28 H 1.09001 * 109.47380 * 154.71306 * 18 17 13 29 29 H 1.00908 * 110.99847 * 179.97438 * 19 18 17 30 30 H 1.00899 * 111.00283 * 303.95218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3375 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5549 -0.3501 -0.7601 11 1 6.3830 0.9225 -2.8172 12 1 6.5569 2.0740 -0.6901 13 7 1.6524 2.0976 1.2518 14 7 1.9941 1.7245 2.4354 15 7 1.4818 2.5121 3.3140 16 6 0.7705 3.4558 2.6873 17 6 0.8763 3.2004 1.3623 18 6 0.2503 3.9831 0.2369 19 7 1.2170 4.9638 -0.2745 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.8293 -0.0604 -2.9502 26 1 0.2198 4.2626 3.1479 27 1 -0.0348 3.3018 -0.5649 28 1 -0.6348 4.5027 0.6040 29 1 0.8209 5.5016 -1.0309 30 1 1.5458 5.5668 0.4647 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154602.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:57 Heat of formation + Delta-G solvation = 84.477080 kcal Electronic energy + Delta-G solvation = -14316.909469 eV Core-core repulsion = 11956.030880 eV Total energy + Delta-G solvation = -2360.878589 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.35234 -35.66637 -34.69868 -32.30800 -31.03394 -29.93355 -27.34668 -24.77558 -23.66353 -22.14810 -20.82728 -19.20534 -16.88666 -16.38466 -15.51621 -15.12308 -14.49673 -14.20314 -13.87454 -13.51176 -12.99204 -12.75237 -12.32479 -11.82322 -11.45723 -11.09373 -10.90512 -10.77528 -10.37228 -10.27983 -10.10353 -9.97197 -9.61914 -8.78711 -8.57321 -8.56886 -8.34127 -6.27176 -4.33992 2.52386 3.23630 3.29470 3.33718 3.36066 3.60309 4.30229 4.89678 5.04755 5.07307 5.31237 5.47510 5.73769 5.93053 6.03160 6.09720 6.19398 6.36736 6.66066 6.76234 6.83058 6.94003 7.26491 7.33372 7.50894 7.61491 7.66387 7.81004 7.96390 8.68653 9.31675 9.48841 10.78916 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.011589 C = 0.011076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.307776 B = 2415.577586 C = 2527.383685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.271 3.729 4 H 0.073 0.927 5 C -0.520 4.520 6 H 0.067 0.933 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.226 5.226 14 N -0.075 5.075 15 N -0.308 5.308 16 C -0.070 4.070 17 C -0.035 4.035 18 C 0.142 3.858 19 N -0.838 5.838 20 H 0.033 0.967 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.116 0.884 24 H 0.053 0.947 25 H 0.268 0.732 26 H 0.172 0.828 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.342 0.658 30 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 5.584 0.527 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.173 3.827 4 H 0.090 0.910 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.020 5.020 14 N -0.055 5.055 15 N -0.170 5.170 16 C -0.231 4.231 17 C -0.170 4.170 18 C 0.010 3.990 19 N -0.369 5.369 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.134 0.866 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.189 0.811 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.271 3.772 0.969 6.554 hybrid contribution -0.355 1.489 -0.578 1.636 sum -5.626 5.261 0.391 7.713 Atomic orbital electron populations 1.21854 0.98619 1.00302 0.99973 1.21998 0.92370 0.98143 1.04631 1.19751 0.97183 0.90248 0.75541 0.90989 1.21086 0.89041 1.39242 1.06504 0.91487 1.24826 0.99287 0.94319 0.94910 1.69823 1.35515 1.37834 1.09519 0.86294 0.83992 0.78812 0.77255 1.20292 1.20936 1.19685 1.48169 1.27553 1.17007 1.09276 1.78198 1.18959 1.21166 0.87211 1.75014 1.11715 1.04434 1.25887 1.23118 1.06560 1.02856 0.90575 1.21909 1.03460 0.94863 0.96791 1.19987 0.91683 0.93613 0.93692 1.58515 1.41806 1.22176 1.14412 0.94780 0.93415 0.93689 0.86586 0.92832 0.92261 0.81098 0.89827 0.93612 0.84464 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.80 37.16 0.36 -2.55 16 2 C -0.13 -3.07 5.34 -26.73 -0.14 -3.21 16 3 C 0.27 6.58 2.39 -69.08 -0.16 6.42 16 4 H 0.07 1.81 6.86 -51.93 -0.36 1.45 16 5 C -0.52 -14.09 8.70 -34.44 -0.30 -14.39 16 6 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -23.58 11.29 55.43 0.63 -22.95 16 9 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.23 -5.16 2.51 -51.72 -0.13 -5.29 16 14 N -0.08 -1.84 12.82 60.35 0.77 -1.07 16 15 N -0.31 -6.89 12.41 30.23 0.38 -6.51 16 16 C -0.07 -1.32 11.99 -17.74 -0.21 -1.53 16 17 C -0.03 -0.67 6.51 -82.09 -0.53 -1.21 16 18 C 0.14 2.16 6.80 -4.97 -0.03 2.13 16 19 N -0.84 -12.21 9.61 -11.41 -0.11 -12.32 16 20 H 0.03 0.66 7.75 -51.93 -0.40 0.26 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.12 2.88 5.95 -51.93 -0.31 2.58 16 24 H 0.05 1.29 8.09 -51.93 -0.42 0.87 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 27 H 0.08 1.33 7.38 -51.93 -0.38 0.94 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.34 3.91 9.08 -39.29 -0.36 3.55 16 30 H 0.34 4.58 8.99 -39.29 -0.35 4.22 16 LS Contribution 259.01 15.07 3.90 3.90 Total: -1.00 -29.51 259.01 -4.52 -34.02 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.82 Total: 6.79 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.12 Total: -12.59 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 1.54 Total: -48.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.51 -4.52 -34.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154602.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.499 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds