Wall clock time and date at job start Sun Mar 29 2020 21:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46934 * 2 1 4 4 H 1.08999 * 109.47032 * 304.99762 * 3 2 1 5 5 C 1.50697 * 109.47074 * 185.00009 * 3 2 1 6 6 H 1.08003 * 120.00027 * 240.00098 * 5 3 2 7 7 C 1.37876 * 120.00166 * 59.99618 * 5 3 2 8 8 N 1.31511 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47087 * 90.00582 * 9 7 5 11 11 H 1.48499 * 109.47364 * 210.00352 * 9 7 5 12 12 H 1.48500 * 109.47506 * 330.00350 * 9 7 5 13 13 N 1.46503 * 109.47163 * 64.99993 * 3 2 1 14 14 N 1.28716 * 125.86732 * 60.16784 * 13 3 2 15 15 N 1.28635 * 110.17719 * 180.23943 * 14 13 3 16 16 C 1.33767 * 108.88478 * 359.76336 * 15 14 13 17 17 C 1.35303 * 125.86748 * 240.00259 * 13 3 2 18 18 C 1.50701 * 126.91382 * 0.03193 * 17 13 3 19 19 N 1.46901 * 109.46921 * 274.71037 * 18 17 13 20 20 H 1.09000 * 109.47075 * 299.99826 * 1 2 3 21 21 H 1.08992 * 109.46957 * 60.00150 * 1 2 3 22 22 H 1.09000 * 109.46522 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47801 * 240.00155 * 2 1 3 24 24 H 1.09000 * 109.47483 * 119.99501 * 2 1 3 25 25 H 0.96999 * 120.00417 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.75057 * 179.97438 * 16 15 14 27 27 H 1.09002 * 109.47060 * 34.71218 * 18 17 13 28 28 H 1.09001 * 109.47380 * 154.71306 * 18 17 13 29 29 H 1.00908 * 110.99847 * 179.97438 * 19 18 17 30 30 H 1.00899 * 111.00283 * 303.95218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3375 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5549 -0.3501 -0.7601 11 1 6.3830 0.9225 -2.8172 12 1 6.5569 2.0740 -0.6901 13 7 1.6524 2.0976 1.2518 14 7 1.9941 1.7245 2.4354 15 7 1.4818 2.5121 3.3140 16 6 0.7705 3.4558 2.6873 17 6 0.8763 3.2004 1.3623 18 6 0.2503 3.9831 0.2369 19 7 1.2170 4.9638 -0.2745 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.8293 -0.0604 -2.9502 26 1 0.2198 4.2626 3.1479 27 1 -0.0348 3.3018 -0.5649 28 1 -0.6348 4.5027 0.6040 29 1 0.8209 5.5016 -1.0309 30 1 1.5458 5.5668 0.4647 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154602.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:57 Heat of formation + Delta-G solvation = 62.734525 kcal Electronic energy + Delta-G solvation = -14317.852297 eV Core-core repulsion = 11956.030880 eV Total energy + Delta-G solvation = -2361.821417 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.98830 -37.47362 -35.97046 -34.23730 -32.73950 -31.40546 -29.22259 -26.17099 -25.49408 -23.83514 -22.42541 -20.90340 -18.79037 -18.02213 -17.14274 -16.61682 -16.30743 -15.62788 -15.26785 -14.87633 -14.75103 -14.32858 -13.99636 -13.33377 -13.29559 -12.95195 -12.74234 -12.40961 -12.17741 -12.07065 -11.82144 -11.72558 -11.46905 -10.66915 -10.50429 -10.04358 -9.52804 -8.28978 -6.42509 0.93578 1.38565 1.40538 1.50095 1.76598 1.93625 2.37932 3.00783 3.64486 3.79451 3.98854 4.18683 4.27271 4.33694 4.47204 4.55588 4.66879 4.77587 4.97749 5.11708 5.19103 5.40325 5.43816 5.63004 5.65659 5.94862 6.08024 6.23453 6.60136 6.68851 7.25710 7.83423 8.76005 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.011589 C = 0.011076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.307776 B = 2415.577586 C = 2527.383685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.064 0.936 5 C -0.544 4.544 6 H 0.040 0.960 7 C 0.036 3.964 8 N -0.901 5.901 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.270 1.270 12 H -0.279 1.279 13 N -0.239 5.239 14 N -0.126 5.126 15 N -0.326 5.326 16 C -0.063 4.063 17 C -0.033 4.033 18 C 0.145 3.855 19 N -0.857 5.857 20 H 0.031 0.969 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.098 0.902 24 H 0.032 0.968 25 H 0.273 0.727 26 H 0.219 0.781 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.360 0.640 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 6.656 0.117 10.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.182 3.818 4 H 0.082 0.918 5 C -0.582 4.582 6 H 0.058 0.942 7 C -0.166 4.166 8 N -0.538 5.538 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.033 5.033 14 N -0.105 5.105 15 N -0.188 5.188 16 C -0.224 4.224 17 C -0.169 4.169 18 C 0.013 3.987 19 N -0.391 5.391 20 H 0.050 0.950 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.116 0.884 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.235 0.765 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.295 4.845 0.556 7.962 hybrid contribution -0.080 1.232 -0.429 1.307 sum -6.374 6.077 0.127 8.807 Atomic orbital electron populations 1.21718 0.95582 1.01785 1.00371 1.21835 0.95035 0.97117 1.02571 1.19419 0.95571 0.90765 0.76068 0.91823 1.21164 0.90687 1.40077 1.06311 0.94172 1.25427 1.02776 0.93841 0.94557 1.69878 1.36730 1.37580 1.09638 0.85505 0.79764 0.78351 0.77733 1.20041 1.19438 1.20450 1.48029 1.28554 1.18251 1.08442 1.78192 1.21225 1.23044 0.87999 1.74953 1.12353 1.05328 1.26180 1.23867 1.05479 1.02724 0.90288 1.22737 1.01937 0.93613 0.98567 1.20120 0.92788 0.93533 0.92298 1.58426 1.42426 1.22787 1.15460 0.95027 0.92176 0.91715 0.88430 0.94888 0.91797 0.76488 0.90676 0.89187 0.82410 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.80 71.98 0.71 -4.47 16 2 C -0.13 -5.92 5.34 30.60 0.16 -5.76 16 3 C 0.28 13.80 2.39 44.25 0.11 13.91 16 4 H 0.06 3.21 6.86 -2.39 -0.02 3.19 16 5 C -0.54 -30.10 8.70 25.60 0.22 -29.87 16 6 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 7 C 0.04 1.90 5.29 84.65 0.45 2.35 16 8 N -0.90 -47.68 11.29 21.45 0.24 -47.44 16 9 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.24 -10.92 2.51 -317.53 -0.80 -11.71 16 14 N -0.13 -6.21 12.82 37.02 0.47 -5.73 16 15 N -0.33 -14.39 12.41 -58.26 -0.72 -15.11 16 16 C -0.06 -2.20 11.99 83.73 1.00 -1.20 16 17 C -0.03 -1.22 6.51 41.36 0.27 -0.95 16 18 C 0.14 3.99 6.80 85.56 0.58 4.57 16 19 N -0.86 -23.01 9.61 -190.00 -1.83 -24.83 16 20 H 0.03 1.18 7.75 -2.39 -0.02 1.17 16 21 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.10 4.91 5.95 -2.39 -0.01 4.90 16 24 H 0.03 1.63 8.09 -2.39 -0.02 1.61 16 25 H 0.27 13.60 8.31 -92.71 -0.77 12.82 16 26 H 0.22 5.26 8.06 -2.91 -0.02 5.23 16 27 H 0.07 2.22 7.38 -2.39 -0.02 2.20 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.36 7.31 9.08 -89.69 -0.81 6.49 16 30 H 0.35 8.49 8.99 -89.69 -0.81 7.68 16 Total: -1.00 -64.18 259.01 2.44 -61.74 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.46 Total: 19.29 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 3.50 Total: -21.42 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -2.63 Total: -104.83 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.18 2.44 -61.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154602.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.473 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds