Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48533 * 110.99983 * 2 1 4 4 C 1.55106 * 103.28242 * 200.33387 * 3 2 1 5 5 C 1.54593 * 102.84411 * 37.30704 * 4 3 2 6 6 H 1.09001 * 110.30794 * 97.11778 * 5 4 3 7 7 N 1.46897 * 110.30870 * 219.18476 * 5 4 3 8 8 C 1.47959 * 110.99999 * 289.14511 * 7 5 4 9 9 C 1.53933 * 86.18158 * 222.41300 * 8 7 5 10 10 C 1.50700 * 113.73543 * 138.07664 * 9 8 7 11 11 H 1.08007 * 119.99771 * 1.90198 * 10 9 8 12 12 C 1.37871 * 120.00259 * 181.90352 * 10 9 8 13 13 N 1.31517 * 120.00117 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99986 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47288 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47021 * 299.99904 * 14 12 10 17 17 H 1.48498 * 109.46992 * 60.00217 * 14 12 10 18 18 C 1.48186 * 111.07482 * 189.71213 * 7 5 4 19 19 C 1.47900 * 110.99810 * 242.60604 * 2 1 3 20 20 H 1.09001 * 109.47352 * 177.39903 * 1 2 3 21 21 H 1.09007 * 109.47066 * 297.39948 * 1 2 3 22 22 H 1.09002 * 109.47047 * 57.39621 * 1 2 3 23 23 H 1.08999 * 110.66860 * 318.71527 * 3 2 1 24 24 H 1.09002 * 110.66566 * 81.67870 * 3 2 1 25 25 H 1.08992 * 110.70789 * 278.99764 * 4 3 2 26 26 H 1.09000 * 110.80801 * 155.66347 * 4 3 2 27 27 H 1.09004 * 113.76080 * 108.09918 * 8 7 5 28 28 H 1.09004 * 113.76000 * 336.73270 * 8 7 5 29 29 H 1.09000 * 113.73804 * 269.25568 * 9 8 7 30 30 H 0.97000 * 119.99797 * 0.02562 * 13 12 10 31 31 H 1.09002 * 113.76039 * 23.23549 * 18 7 5 32 32 H 1.09007 * 113.82299 * 251.81255 * 18 7 5 33 33 H 1.09001 * 109.91995 * 26.48672 * 19 2 1 34 34 H 1.09001 * 109.91214 * 265.19829 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4505 1.2121 -0.5246 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5471 -2.5860 7 7 4.4420 -0.8149 -1.5405 8 6 5.6711 -0.1624 -2.0432 9 6 5.9515 -1.4870 -2.7755 10 6 6.4651 -1.3063 -4.1807 11 1 6.6324 -0.3132 -4.5710 12 6 6.7214 -2.4087 -4.9681 13 7 6.5181 -3.6180 -4.4928 14 14 7.3588 -2.1846 -6.7097 15 1 7.5530 -3.5148 -7.3407 16 1 6.3757 -1.4003 -7.4995 17 1 8.6548 -1.4607 -6.6732 18 6 4.4351 -1.7402 -2.6980 19 6 1.9990 -0.6353 -1.2259 20 1 -0.3634 -1.0266 -0.0466 21 1 -0.3633 0.4730 0.9124 22 1 -0.3633 0.5537 -0.8657 23 1 1.4238 2.0205 -0.6729 24 1 2.0014 1.7987 1.0091 25 1 4.1137 0.8861 0.2766 26 1 3.8132 2.1360 -0.9751 27 1 6.3958 0.0697 -1.2627 28 1 5.4807 0.6773 -2.7117 29 1 6.5444 -2.1929 -2.1940 30 1 6.1875 -3.7343 -3.5883 31 1 3.8823 -1.3631 -3.5584 32 1 4.1738 -2.7665 -2.4397 33 1 1.2758 -0.5403 -2.0359 34 1 2.2121 -1.6874 -1.0365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255430749.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = 35.611260 kcal Electronic energy + Delta-G solvation = -14212.128107 eV Core-core repulsion = 11952.670880 eV Total energy + Delta-G solvation = -2259.457227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.58975 -37.57778 -33.03867 -31.55971 -29.09889 -26.80150 -25.39318 -24.68268 -23.21466 -20.95306 -20.00275 -18.87345 -16.91996 -16.06207 -15.48424 -14.70890 -14.28648 -13.98668 -13.75681 -13.38930 -12.97423 -12.49165 -12.10853 -11.81467 -11.62038 -11.40325 -11.28138 -11.09150 -10.81731 -10.64590 -10.41541 -10.11858 -9.78247 -9.28479 -8.70319 -8.39647 -8.38954 -7.89434 -6.38221 -4.09536 3.42151 3.43493 3.62522 4.08712 4.49206 4.68450 4.75974 4.87503 5.26062 5.31749 5.35899 5.37345 5.51155 5.70961 5.75063 5.77775 5.82706 5.95527 6.03231 6.14380 6.27198 6.34469 6.43799 6.53708 6.65792 6.86773 6.92916 7.05371 7.12990 7.52784 7.96220 8.19347 8.39347 8.84467 9.63371 11.01436 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060826 B = 0.006817 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.218983 B = 4106.480670 C = 4242.076107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.519 5.519 3 C 0.036 3.964 4 C -0.113 4.113 5 C 0.042 3.958 6 H 0.046 0.954 7 N -0.477 5.477 8 C 0.009 3.991 9 C 0.019 3.981 10 C -0.596 4.596 11 H 0.049 0.951 12 C 0.022 3.978 13 N -0.907 5.907 14 Si 1.067 2.933 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.288 1.288 18 C 0.003 3.997 19 C 0.048 3.952 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.024 0.976 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.271 0.729 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 8.295 5.959 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.243 5.243 3 C -0.092 4.092 4 C -0.152 4.152 5 C -0.069 4.069 6 H 0.064 0.936 7 N -0.200 5.200 8 C -0.119 4.119 9 C 0.000 4.000 10 C -0.635 4.635 11 H 0.068 0.932 12 C -0.183 4.183 13 N -0.542 5.542 14 Si 0.895 3.105 15 H -0.207 1.207 16 H -0.216 1.216 17 H -0.214 1.214 18 C -0.126 4.126 19 C -0.080 4.080 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.409 6.916 5.737 12.307 hybrid contribution -1.038 1.745 -0.193 2.039 sum -9.447 8.661 5.544 13.964 Atomic orbital electron populations 1.22511 0.88397 1.01894 1.00455 1.64729 1.07469 1.14740 1.37338 1.23247 0.95402 0.89928 1.00674 1.22523 0.96210 0.97551 0.98892 1.22985 0.92960 0.93766 0.97158 0.93568 1.68661 1.01197 1.11608 1.38571 1.23877 0.92236 0.98680 0.97120 1.20450 0.91429 0.91980 0.96160 1.21917 1.48646 0.94884 0.98018 0.93249 1.25818 0.94836 0.92605 1.05030 1.70775 1.41996 1.22658 1.18728 0.83571 0.76301 0.75769 0.74827 1.20726 1.21557 1.21402 1.24213 1.01930 0.96147 0.90270 1.22852 0.94627 1.00546 0.90009 0.91404 0.91501 0.95718 0.94193 0.90214 0.89765 0.91551 0.91613 0.92691 0.93340 0.91783 0.92544 0.91744 0.94291 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.75 16 2 N -0.52 -7.51 5.55 -238.60 -1.33 -8.83 16 3 C 0.04 0.46 6.56 -1.81 -0.01 0.45 16 4 C -0.11 -1.68 6.31 -24.78 -0.16 -1.84 16 5 C 0.04 0.72 2.28 -66.36 -0.15 0.57 16 6 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 7 N -0.48 -9.77 5.84 -228.51 -1.34 -11.10 16 8 C 0.01 0.20 7.10 -2.76 -0.02 0.18 16 9 C 0.02 0.48 3.06 -90.84 -0.28 0.20 16 10 C -0.60 -16.55 8.77 -34.44 -0.30 -16.85 16 11 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 12 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 13 N -0.91 -27.08 13.65 55.43 0.76 -26.32 16 14 Si 1.07 24.84 29.90 -169.99 -5.08 19.76 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.00 0.07 6.92 -2.64 -0.02 0.06 16 19 C 0.05 0.77 6.18 -2.76 -0.02 0.75 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 22 H 0.02 0.27 8.00 -51.93 -0.42 -0.15 16 23 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.05 1.17 7.78 -51.93 -0.40 0.76 16 29 H 0.05 1.31 7.70 -51.93 -0.40 0.91 16 30 H 0.27 8.08 7.01 -40.82 -0.29 7.80 16 31 H 0.06 1.33 7.74 -51.93 -0.40 0.93 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 34 H 0.09 1.56 7.73 -51.93 -0.40 1.16 16 LS Contribution 272.46 15.07 4.11 4.11 Total: -1.00 -29.27 272.46 -9.06 -38.33 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.69 Total: -0.74 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -0.49 Total: -15.20 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.90 Total: -46.25 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.27 -9.06 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255430749.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.940 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds