Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48533 * 110.99983 * 2 1 4 4 C 1.55106 * 103.28242 * 200.33387 * 3 2 1 5 5 C 1.54593 * 102.84411 * 37.30704 * 4 3 2 6 6 H 1.09001 * 110.30794 * 97.11778 * 5 4 3 7 7 N 1.46897 * 110.30870 * 219.18476 * 5 4 3 8 8 C 1.47959 * 110.99999 * 289.14511 * 7 5 4 9 9 C 1.53933 * 86.18158 * 222.41300 * 8 7 5 10 10 C 1.50700 * 113.73543 * 138.07664 * 9 8 7 11 11 H 1.08007 * 119.99771 * 1.90198 * 10 9 8 12 12 C 1.37871 * 120.00259 * 181.90352 * 10 9 8 13 13 N 1.31517 * 120.00117 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99986 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47288 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47021 * 299.99904 * 14 12 10 17 17 H 1.48498 * 109.46992 * 60.00217 * 14 12 10 18 18 C 1.48186 * 111.07482 * 189.71213 * 7 5 4 19 19 C 1.47900 * 110.99810 * 242.60604 * 2 1 3 20 20 H 1.09001 * 109.47352 * 177.39903 * 1 2 3 21 21 H 1.09007 * 109.47066 * 297.39948 * 1 2 3 22 22 H 1.09002 * 109.47047 * 57.39621 * 1 2 3 23 23 H 1.08999 * 110.66860 * 318.71527 * 3 2 1 24 24 H 1.09002 * 110.66566 * 81.67870 * 3 2 1 25 25 H 1.08992 * 110.70789 * 278.99764 * 4 3 2 26 26 H 1.09000 * 110.80801 * 155.66347 * 4 3 2 27 27 H 1.09004 * 113.76080 * 108.09918 * 8 7 5 28 28 H 1.09004 * 113.76000 * 336.73270 * 8 7 5 29 29 H 1.09000 * 113.73804 * 269.25568 * 9 8 7 30 30 H 0.97000 * 119.99797 * 0.02562 * 13 12 10 31 31 H 1.09002 * 113.76039 * 23.23549 * 18 7 5 32 32 H 1.09007 * 113.82299 * 251.81255 * 18 7 5 33 33 H 1.09001 * 109.91995 * 26.48672 * 19 2 1 34 34 H 1.09001 * 109.91214 * 265.19829 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4505 1.2121 -0.5246 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5471 -2.5860 7 7 4.4420 -0.8149 -1.5405 8 6 5.6711 -0.1624 -2.0432 9 6 5.9515 -1.4870 -2.7755 10 6 6.4651 -1.3063 -4.1807 11 1 6.6324 -0.3132 -4.5710 12 6 6.7214 -2.4087 -4.9681 13 7 6.5181 -3.6180 -4.4928 14 14 7.3588 -2.1846 -6.7097 15 1 7.5530 -3.5148 -7.3407 16 1 6.3757 -1.4003 -7.4995 17 1 8.6548 -1.4607 -6.6732 18 6 4.4351 -1.7402 -2.6980 19 6 1.9990 -0.6353 -1.2259 20 1 -0.3634 -1.0266 -0.0466 21 1 -0.3633 0.4730 0.9124 22 1 -0.3633 0.5537 -0.8657 23 1 1.4238 2.0205 -0.6729 24 1 2.0014 1.7987 1.0091 25 1 4.1137 0.8861 0.2766 26 1 3.8132 2.1360 -0.9751 27 1 6.3958 0.0697 -1.2627 28 1 5.4807 0.6773 -2.7117 29 1 6.5444 -2.1929 -2.1940 30 1 6.1875 -3.7343 -3.5883 31 1 3.8823 -1.3631 -3.5584 32 1 4.1738 -2.7665 -2.4397 33 1 1.2758 -0.5403 -2.0359 34 1 2.2121 -1.6874 -1.0365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255430749.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = 14.191529 kcal Electronic energy + Delta-G solvation = -14213.056937 eV Core-core repulsion = 11952.670880 eV Total energy + Delta-G solvation = -2260.386056 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.13382 -38.97883 -35.01129 -32.94862 -30.44403 -28.41259 -27.05310 -26.23278 -24.95604 -22.06383 -21.55401 -20.66646 -18.89274 -17.41779 -16.81511 -16.40245 -15.76366 -15.54376 -15.16157 -15.06590 -14.21886 -13.97288 -13.55468 -13.41205 -13.36153 -12.85156 -12.64282 -12.47728 -12.28583 -12.03017 -11.95651 -11.80342 -11.54350 -11.20081 -10.67168 -10.51055 -9.70358 -9.43590 -8.62676 -6.34892 1.54283 1.61658 1.81083 2.57281 2.99094 3.08882 3.16841 3.49888 3.72042 4.02320 4.16488 4.25898 4.26961 4.32023 4.42633 4.51890 4.52829 4.63245 4.66392 4.78071 4.85571 4.88685 4.93792 4.96507 4.99889 5.15444 5.40912 5.48299 5.81576 6.04830 6.05218 6.16723 6.27873 6.60603 7.46357 8.76799 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060826 B = 0.006817 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.218983 B = 4106.480670 C = 4242.076107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.042 3.958 4 C -0.109 4.109 5 C 0.035 3.965 6 H 0.040 0.960 7 N -0.474 5.474 8 C 0.025 3.975 9 C -0.002 4.002 10 C -0.607 4.607 11 H 0.049 0.951 12 C -0.028 4.028 13 N -0.933 5.933 14 Si 1.115 2.885 15 H -0.285 1.285 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.017 3.983 19 C 0.053 3.947 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 10.159 6.026 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.260 5.260 3 C -0.086 4.086 4 C -0.147 4.147 5 C -0.075 4.075 6 H 0.058 0.942 7 N -0.197 5.197 8 C -0.103 4.103 9 C -0.021 4.021 10 C -0.645 4.645 11 H 0.067 0.933 12 C -0.227 4.227 13 N -0.569 5.569 14 Si 0.936 3.064 15 H -0.211 1.211 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.112 4.112 19 C -0.075 4.075 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.301 8.807 5.832 14.074 hybrid contribution -0.791 1.187 -0.141 1.433 sum -10.092 9.994 5.691 15.301 Atomic orbital electron populations 1.22579 0.86483 1.02410 1.01778 1.64715 1.09397 1.15715 1.36135 1.23285 0.93888 0.89365 1.02076 1.22513 0.97653 0.96947 0.97620 1.23097 0.92258 0.94159 0.97971 0.94171 1.68616 1.02269 1.11937 1.36885 1.23726 0.92831 0.96789 0.96974 1.20486 0.92313 0.93936 0.95371 1.22253 1.48242 0.94846 0.99168 0.93289 1.27268 0.94555 0.92117 1.08753 1.70901 1.43965 1.23738 1.18303 0.82962 0.76915 0.75949 0.70551 1.21055 1.19664 1.19546 1.23896 0.99973 0.96307 0.91059 1.22699 0.94272 0.99319 0.91232 0.91372 0.89596 0.94910 0.92697 0.88287 0.90838 0.90004 0.90281 0.92188 0.96136 0.93208 0.93336 0.92868 0.93506 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.40 127.69 1.20 1.52 16 2 N -0.54 -14.26 5.55 -908.79 -5.05 -19.30 16 3 C 0.04 0.94 6.56 86.71 0.57 1.51 16 4 C -0.11 -2.97 6.31 31.86 0.20 -2.77 16 5 C 0.04 1.18 2.28 45.79 0.10 1.29 16 6 H 0.04 1.41 7.77 -2.39 -0.02 1.40 16 7 N -0.47 -19.31 5.84 -876.87 -5.13 -24.43 16 8 C 0.03 1.07 7.10 86.41 0.61 1.69 16 9 C 0.00 -0.10 3.06 -10.90 -0.03 -0.13 16 10 C -0.61 -33.95 8.77 25.60 0.22 -33.73 16 11 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 12 C -0.03 -1.60 5.46 84.65 0.46 -1.14 16 13 N -0.93 -56.95 13.65 21.45 0.29 -56.65 16 14 Si 1.11 49.61 29.90 68.60 2.05 51.66 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 18 C 0.02 0.79 6.92 86.37 0.60 1.39 16 19 C 0.05 1.66 6.18 86.44 0.53 2.19 16 20 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.03 0.61 8.00 -2.39 -0.02 0.59 16 23 H 0.05 1.11 7.96 -2.39 -0.02 1.09 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.06 2.47 7.78 -2.39 -0.02 2.46 16 29 H 0.02 1.16 7.70 -2.39 -0.02 1.14 16 30 H 0.26 16.00 7.01 -92.71 -0.65 15.35 16 31 H 0.05 2.33 7.74 -2.39 -0.02 2.31 16 32 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.05 1.36 7.73 -2.39 -0.02 1.34 16 34 H 0.07 2.33 7.73 -2.39 -0.02 2.31 16 Total: -1.00 -62.76 272.46 -2.19 -64.95 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.16 Total: 11.97 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.47 Total: -28.19 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -9.88 Total: -100.39 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Total: -62.76 -2.19 -64.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255430749.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.146 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds