Wall clock time and date at job start Sun Mar 29 2020 21:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.52995 * 109.46824 * 240.00436 * 2 1 3 5 5 C 1.52992 * 109.47207 * 120.00143 * 2 1 3 6 6 C 1.50699 * 109.47216 * 59.99837 * 5 2 1 7 7 N 1.31128 * 126.05512 * 89.97241 * 6 5 2 8 8 N 1.28681 * 109.58969 * 180.02562 * 7 6 5 9 9 C 1.32854 * 109.00731 * 0.02562 * 8 7 6 10 10 C 1.39902 * 126.46532 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99655 * 179.97438 * 10 9 8 12 12 C 1.40346 * 120.00659 * 359.97438 * 10 9 8 13 13 N 1.30626 * 119.99572 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00426 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46986 * 59.99856 * 14 12 10 16 16 H 1.48498 * 109.47031 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46936 * 299.99901 * 14 12 10 18 18 O 1.34309 * 126.06102 * 270.00226 * 6 5 2 19 19 H 1.09003 * 109.46981 * 299.99982 * 1 2 3 20 20 H 1.08997 * 109.47110 * 59.99098 * 1 2 3 21 21 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47245 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47410 * 300.00384 * 3 2 1 24 24 H 1.09003 * 109.47216 * 60.00163 * 3 2 1 25 25 H 1.08997 * 109.47063 * 299.99625 * 4 2 1 26 26 H 1.09004 * 109.47702 * 60.00040 * 4 2 1 27 27 H 1.09004 * 109.46887 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.47743 * 300.00108 * 5 2 1 29 29 H 1.09002 * 109.47309 * 179.97438 * 5 2 1 30 30 H 0.97006 * 120.00156 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 7 2.1457 -3.1756 0.7186 8 7 1.4364 -4.2337 0.9007 9 6 0.3330 -3.9061 1.5641 10 6 -0.6914 -4.7752 1.9546 11 1 -1.5465 -4.3944 2.4935 12 6 -0.6081 -6.1418 1.6461 13 7 0.4257 -6.6022 0.9938 14 14 -1.9757 -7.3023 2.1681 15 1 -3.2541 -6.8717 1.5474 16 1 -1.6505 -8.6817 1.7246 17 1 -2.1097 -7.2759 3.6468 18 8 0.3877 -2.5740 1.7920 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6767 1.9564 0.8900 25 1 1.6766 -1.7488 -1.2493 26 1 1.6766 -0.2073 -2.1393 27 1 3.1300 -0.7207 -1.2495 28 1 1.6767 -0.2075 2.1392 29 1 3.1301 -0.7216 1.2489 30 1 0.4832 -7.5467 0.7802 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257830351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:07 Heat of formation + Delta-G solvation = -1.772701 kcal Electronic energy + Delta-G solvation = -14029.336075 eV Core-core repulsion = 11632.424663 eV Total energy + Delta-G solvation = -2396.911412 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.66501 -37.18956 -34.02005 -33.69158 -30.19197 -27.75954 -26.97621 -26.82286 -24.85023 -21.45915 -20.67083 -18.45820 -17.61015 -15.56164 -15.46100 -14.82811 -14.24249 -13.94324 -13.78158 -13.33259 -12.65915 -12.20888 -11.88997 -11.66486 -11.37531 -11.34993 -11.27911 -10.98680 -10.58025 -10.52655 -10.39717 -10.30978 -10.22454 -9.70123 -9.56480 -8.62556 -7.81443 -6.81815 -4.82754 2.84406 2.99738 3.03325 3.25663 3.76458 4.27174 4.39418 5.12866 5.13756 5.18945 5.29200 5.71836 5.81354 5.87104 5.99285 6.10136 6.12185 6.16192 6.27406 6.44091 6.45034 6.54702 6.75059 6.78292 6.86938 7.06664 7.44970 7.62106 8.08065 8.32918 8.57062 10.10902 10.61774 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.064130 B = 0.007877 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.506130 B = 3554.001269 C = 3702.731952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.013 3.987 6 C 0.021 3.979 7 N -0.278 5.278 8 N -0.362 5.362 9 C 0.288 3.712 10 C -0.428 4.428 11 H 0.093 0.907 12 C 0.073 3.927 13 N -0.725 5.725 14 Si 0.932 3.068 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.262 1.262 18 O -0.272 6.272 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 8.384 -0.570 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.026 4.026 6 C -0.190 4.190 7 N -0.128 5.128 8 N -0.216 5.216 9 C 0.103 3.897 10 C -0.464 4.464 11 H 0.112 0.888 12 C -0.153 4.153 13 N -0.349 5.349 14 Si 0.755 3.245 15 H -0.186 1.186 16 H -0.198 1.198 17 H -0.186 1.186 18 O -0.160 6.160 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.003 7.474 -1.289 7.585 hybrid contribution -1.498 0.101 0.859 1.729 sum -1.495 7.576 -0.430 7.734 Atomic orbital electron populations 1.21848 0.94541 1.02491 1.00664 1.20566 0.95973 0.94623 0.95625 1.21840 1.00844 0.95343 1.01426 1.21840 1.00775 1.01278 0.95565 1.19657 0.99903 0.85465 0.97589 1.26347 0.87130 0.98239 1.07325 1.74122 1.26419 0.96082 1.16195 1.75714 1.04573 1.15777 1.25547 1.23747 0.95920 0.77115 0.92954 1.18156 1.03257 0.90542 1.34435 0.88843 1.25925 0.97202 0.98360 0.93837 1.69933 1.25448 1.15947 1.23607 0.85981 0.80276 0.78221 0.80022 1.18639 1.19825 1.18627 1.84702 1.39339 1.25789 1.66213 0.93001 0.93316 0.92066 0.92654 0.92772 0.92823 0.91559 0.93650 0.92764 0.91077 0.89699 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.22 37.16 0.31 -1.95 16 2 C -0.07 -1.05 0.80 -154.51 -0.12 -1.18 16 3 C -0.14 -1.66 8.47 37.16 0.31 -1.34 16 4 C -0.14 -2.31 8.19 37.15 0.30 -2.00 16 5 C 0.01 0.23 4.91 -27.89 -0.14 0.09 16 6 C 0.02 0.51 5.72 -12.58 -0.07 0.43 16 7 N -0.28 -7.67 11.47 32.68 0.37 -7.29 16 8 N -0.36 -11.04 10.52 30.64 0.32 -10.72 16 9 C 0.29 8.44 7.85 -16.49 -0.13 8.31 16 10 C -0.43 -11.76 9.46 -38.17 -0.36 -12.12 16 11 H 0.09 2.36 7.85 -52.48 -0.41 1.94 16 12 C 0.07 1.87 5.50 -17.27 -0.10 1.78 16 13 N -0.73 -19.85 11.93 55.57 0.66 -19.18 16 14 Si 0.93 18.43 29.56 -169.99 -5.03 13.40 16 15 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 18 O -0.27 -7.31 10.27 3.00 0.03 -7.28 16 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 1.22 6.74 -51.93 -0.35 0.87 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.38 6.66 -51.93 -0.35 1.03 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.28 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 257.02 15.07 3.87 3.87 Total: -1.00 -31.46 257.02 -3.80 -35.27 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.05 Total: -0.07 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.01 Total: -7.99 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 1.36 Total: -37.19 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.03 Total: -7.28 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.46 -3.80 -35.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257830351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.493 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds