Wall clock time and date at job start Sun Mar 29 2020 21:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.52995 * 109.46824 * 240.00436 * 2 1 3 5 5 C 1.52992 * 109.47207 * 120.00143 * 2 1 3 6 6 C 1.50699 * 109.47216 * 59.99837 * 5 2 1 7 7 N 1.31128 * 126.05512 * 89.97241 * 6 5 2 8 8 N 1.28681 * 109.58969 * 180.02562 * 7 6 5 9 9 C 1.32854 * 109.00731 * 0.02562 * 8 7 6 10 10 C 1.39902 * 126.46532 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99655 * 179.97438 * 10 9 8 12 12 C 1.40346 * 120.00659 * 359.97438 * 10 9 8 13 13 N 1.30626 * 119.99572 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00426 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46986 * 59.99856 * 14 12 10 16 16 H 1.48498 * 109.47031 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46936 * 299.99901 * 14 12 10 18 18 O 1.34309 * 126.06102 * 270.00226 * 6 5 2 19 19 H 1.09003 * 109.46981 * 299.99982 * 1 2 3 20 20 H 1.08997 * 109.47110 * 59.99098 * 1 2 3 21 21 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47245 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47410 * 300.00384 * 3 2 1 24 24 H 1.09003 * 109.47216 * 60.00163 * 3 2 1 25 25 H 1.08997 * 109.47063 * 299.99625 * 4 2 1 26 26 H 1.09004 * 109.47702 * 60.00040 * 4 2 1 27 27 H 1.09004 * 109.46887 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.47743 * 300.00108 * 5 2 1 29 29 H 1.09002 * 109.47309 * 179.97438 * 5 2 1 30 30 H 0.97006 * 120.00156 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 7 2.1457 -3.1756 0.7186 8 7 1.4364 -4.2337 0.9007 9 6 0.3330 -3.9061 1.5641 10 6 -0.6914 -4.7752 1.9546 11 1 -1.5465 -4.3944 2.4935 12 6 -0.6081 -6.1418 1.6461 13 7 0.4257 -6.6022 0.9938 14 14 -1.9757 -7.3023 2.1681 15 1 -3.2541 -6.8717 1.5474 16 1 -1.6505 -8.6817 1.7246 17 1 -2.1097 -7.2759 3.6468 18 8 0.3877 -2.5740 1.7920 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6767 1.9564 0.8900 25 1 1.6766 -1.7488 -1.2493 26 1 1.6766 -0.2073 -2.1393 27 1 3.1300 -0.7207 -1.2495 28 1 1.6767 -0.2075 2.1392 29 1 3.1301 -0.7216 1.2489 30 1 0.4832 -7.5467 0.7802 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257830351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:06 Heat of formation + Delta-G solvation = -26.109132 kcal Electronic energy + Delta-G solvation = -14030.391382 eV Core-core repulsion = 11632.424663 eV Total energy + Delta-G solvation = -2397.966719 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.74206 -38.53049 -36.07363 -35.74323 -32.08718 -29.56494 -28.17802 -28.09359 -26.74914 -23.57352 -22.58786 -19.94789 -19.52059 -17.55484 -17.42178 -16.53469 -15.69466 -15.44619 -15.29705 -15.07680 -14.16402 -13.63015 -13.44355 -13.11939 -13.03175 -12.83713 -12.65503 -12.54767 -12.29529 -12.08363 -11.90871 -11.82116 -11.66873 -11.57593 -11.35841 -10.72653 -9.89173 -8.75348 -6.94404 1.00677 1.36859 1.55574 1.56646 2.09109 2.26723 2.50843 3.08688 3.76994 3.86751 3.93946 4.24092 4.52538 4.58712 4.70295 4.75248 4.82775 4.89734 4.93155 5.05788 5.07170 5.08789 5.19170 5.31953 5.37456 5.50104 5.53469 5.74346 6.01646 6.25106 6.51472 8.21253 8.51322 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.064130 B = 0.007877 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.506130 B = 3554.001269 C = 3702.731952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.135 4.135 5 C 0.007 3.993 6 C 0.050 3.950 7 N -0.317 5.317 8 N -0.410 5.410 9 C 0.257 3.743 10 C -0.455 4.455 11 H 0.108 0.892 12 C 0.026 3.974 13 N -0.772 5.772 14 Si 1.021 2.979 15 H -0.251 1.251 16 H -0.262 1.262 17 H -0.250 1.250 18 O -0.281 6.281 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.012 0.988 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 9.839 -0.072 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 C -0.185 4.185 4 C -0.192 4.192 5 C -0.031 4.031 6 C -0.164 4.164 7 N -0.164 5.164 8 N -0.263 5.263 9 C 0.071 3.929 10 C -0.491 4.491 11 H 0.126 0.874 12 C -0.196 4.196 13 N -0.396 5.396 14 Si 0.838 3.162 15 H -0.175 1.175 16 H -0.186 1.186 17 H -0.173 1.173 18 O -0.170 6.170 19 H 0.084 0.916 20 H 0.089 0.911 21 H 0.031 0.969 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.801 8.945 -0.812 9.018 hybrid contribution -1.178 -0.221 0.672 1.374 sum -1.979 8.724 -0.140 8.947 Atomic orbital electron populations 1.21839 0.95102 0.99829 1.02539 1.20589 0.95472 0.96857 0.93457 1.21767 1.01667 0.91956 1.03105 1.21818 1.01251 0.98692 0.97466 1.20147 1.00958 0.81903 1.00139 1.27674 0.85286 1.00033 1.03363 1.74008 1.27363 0.96631 1.18425 1.75606 1.05779 1.17369 1.27525 1.24293 0.96627 0.78075 0.93931 1.18794 1.03464 0.91745 1.35098 0.87373 1.27242 1.00052 0.99435 0.92879 1.70040 1.27978 1.17072 1.24504 0.84700 0.76116 0.75401 0.80032 1.17453 1.18552 1.17349 1.84709 1.40447 1.25252 1.66603 0.91567 0.91073 0.96860 0.91365 0.91131 0.91191 0.96563 0.91373 0.91964 0.88627 0.87981 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.22 71.98 0.59 -3.65 16 2 C -0.06 -1.84 0.80 -52.18 -0.04 -1.88 16 3 C -0.13 -2.53 8.47 71.98 0.61 -1.92 16 4 C -0.13 -4.42 8.19 71.98 0.59 -3.83 16 5 C 0.01 0.24 4.91 29.85 0.15 0.39 16 6 C 0.05 2.47 5.72 88.21 0.51 2.97 16 7 N -0.32 -18.23 11.47 -164.71 -1.89 -20.12 16 8 N -0.41 -26.23 10.52 -169.76 -1.79 -28.02 16 9 C 0.26 15.68 7.85 84.94 0.67 16.35 16 10 C -0.46 -25.69 9.46 23.19 0.22 -25.47 16 11 H 0.11 5.53 7.85 -2.91 -0.02 5.50 16 12 C 0.03 1.33 5.50 85.39 0.47 1.80 16 13 N -0.77 -43.49 11.93 21.90 0.26 -43.23 16 14 Si 1.02 37.29 29.56 68.60 2.03 39.32 16 15 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 16 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 17 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 18 O -0.28 -15.59 10.27 -12.20 -0.13 -15.72 16 19 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.01 0.51 6.74 -2.39 -0.02 0.49 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.02 0.66 6.66 -2.39 -0.02 0.65 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.29 14.69 8.29 -92.70 -0.77 13.92 16 Total: -1.00 -72.90 257.02 3.37 -69.54 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.12 Total: 13.46 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 3.76 Total: -15.23 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -3.41 Total: -91.37 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.13 Total: -15.72 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -72.90 3.37 -69.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257830351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.428 kcal (2) G-P(sol) polarization free energy of solvation -72.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds