Wall clock time and date at job start Sun Mar 29 2020 21:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.47356 * 89.97326 * 8 7 6 10 10 C 1.50696 * 109.47356 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99833 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00062 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99801 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99789 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47533 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46938 * 120.00101 * 14 12 10 17 17 H 1.48506 * 109.46639 * 239.99685 * 14 12 10 18 18 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 19 19 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 20 20 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 21 21 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 23 23 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 24 24 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 25 25 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 27 27 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 28 28 H 1.09001 * 109.46572 * 300.00364 * 9 8 7 29 29 H 1.09004 * 109.46725 * 59.99596 * 9 8 7 30 30 H 0.96999 * 119.99812 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 6 2.9236 -4.4688 3.2709 10 6 3.7366 -5.6180 3.8088 11 1 4.7916 -5.4898 4.0009 12 6 3.1338 -6.8334 4.0546 13 7 1.8492 -6.9897 3.8202 14 14 4.1416 -8.2577 4.7220 15 1 5.5515 -7.8266 4.8988 16 1 3.5865 -8.6862 6.0310 17 1 4.0877 -9.3929 3.7660 18 8 2.8035 -1.8104 1.2544 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1299 1.4425 0.0005 26 1 4.6251 -3.4868 2.3870 27 1 4.2579 -2.9674 4.0495 28 1 2.1245 -4.2288 3.9724 29 1 2.4916 -4.7481 2.3099 30 1 1.4252 -7.8448 3.9927 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261573326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:59 Heat of formation + Delta-G solvation = 7.893407 kcal Electronic energy + Delta-G solvation = -13388.703148 eV Core-core repulsion = 10992.210891 eV Total energy + Delta-G solvation = -2396.492258 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.75405 -36.03943 -35.64841 -34.18597 -31.95436 -29.09264 -27.37738 -25.72492 -24.03097 -22.63262 -20.85907 -20.59406 -17.04407 -16.79957 -16.35344 -15.18145 -14.69457 -14.52068 -13.79263 -13.36452 -13.22334 -12.42678 -12.36955 -12.05389 -11.92252 -11.55917 -11.45198 -11.33800 -11.30842 -11.03489 -10.73964 -10.49098 -10.11273 -9.94206 -9.30169 -8.84587 -8.46324 -6.10191 -4.15054 1.62325 2.67060 2.85081 3.27317 3.34864 3.38590 4.15063 4.39146 4.62098 4.84066 4.95061 5.06948 5.26371 5.42847 5.43623 5.63332 5.63895 5.76474 5.89013 5.98622 6.04046 6.17240 6.21809 6.24519 6.62961 7.48258 7.56498 7.85557 8.21007 8.78539 8.90492 9.49947 11.01229 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.069050 B = 0.005834 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.407869 B = 4798.190625 C = 4942.686550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 C -0.143 4.143 4 C 0.138 3.862 5 N -0.285 5.285 6 N -0.305 5.305 7 C 0.196 3.804 8 C -0.025 4.025 9 C 0.027 3.973 10 C -0.526 4.526 11 H 0.062 0.938 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 O -0.227 6.227 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.027 0.973 29 H 0.021 0.979 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 12.303 -8.633 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.012 4.012 3 C -0.201 4.201 4 C -0.074 4.074 5 N -0.132 5.132 6 N -0.151 5.151 7 C -0.014 4.014 8 C -0.064 4.064 9 C -0.011 4.011 10 C -0.564 4.564 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 O -0.106 6.106 19 H 0.089 0.911 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.116 0.884 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.204 12.824 -7.584 14.901 hybrid contribution 0.838 -1.573 -0.615 1.886 sum 0.634 11.251 -8.199 13.936 Atomic orbital electron populations 1.21863 0.92107 1.03097 1.03234 1.19610 0.96805 0.95083 0.89722 1.21846 1.01472 0.93488 1.03287 1.27806 0.94762 0.86593 0.98196 1.74203 1.18877 1.21660 0.98467 1.74401 1.10970 1.03162 1.26555 1.28918 0.97789 0.98532 0.76179 1.20717 0.96735 0.88522 1.00384 1.19171 0.94668 0.89209 0.98062 1.21114 0.95617 0.95551 1.44091 0.91986 1.25021 0.94964 0.98901 0.95387 1.69981 1.09965 1.24889 1.48168 0.86440 0.80309 0.82045 0.78653 1.19550 1.20859 1.20937 1.84802 1.54748 1.39183 1.31909 0.91130 0.90920 0.91989 0.88435 0.90921 0.91144 0.92270 0.89634 0.88053 0.95428 0.96063 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.18 37.16 0.34 -1.14 16 2 C 0.01 0.09 3.39 -91.77 -0.31 -0.22 16 3 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 4 C 0.14 2.33 6.99 -12.94 -0.09 2.24 16 5 N -0.29 -5.54 12.22 32.55 0.40 -5.15 16 6 N -0.31 -6.57 12.22 32.55 0.40 -6.17 16 7 C 0.20 4.03 7.73 -12.94 -0.10 3.93 16 8 C -0.02 -0.51 5.78 -27.88 -0.16 -0.67 16 9 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 10 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 11 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 14 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 O -0.23 -4.33 10.87 5.38 0.06 -4.27 16 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 266.84 15.07 4.02 4.02 Total: -1.00 -31.62 266.84 -4.13 -35.75 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -4.19 Total: -5.05 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.53 Total: -9.45 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 1.53 Total: -37.14 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: 0.06 Total: -4.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.62 -4.13 -35.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261573326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.646 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds