Wall clock time and date at job start Sun Mar 29 2020 21:44:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 N 1.46500 * 109.46970 * 2 1
4 4 N 1.40508 * 127.07186 * 265.30306 * 3 2 1
5 5 H 0.96996 * 126.52232 * 0.03063 * 4 3 2
6 6 C 1.35968 * 106.96576 * 180.15150 * 4 3 2
7 7 N 1.30303 * 109.62124 * 359.58006 * 6 4 3
8 8 C 1.35732 * 110.02666 * 0.26832 * 7 6 4
9 9 N 1.30764 * 126.23547 * 180.02562 * 8 7 6
10 10 C 1.46502 * 119.99678 * 359.97438 * 9 8 7
11 11 C 1.53001 * 109.47042 * 120.00236 * 10 9 8
12 12 C 1.50701 * 109.46988 * 179.97438 * 11 10 9
13 13 H 1.07997 * 120.00176 * 0.02562 * 12 11 10
14 14 C 1.37872 * 119.99792 * 179.97438 * 12 11 10
15 15 N 1.31513 * 120.00595 * 359.97438 * 14 12 11
16 16 Si 1.86810 * 119.99831 * 180.02562 * 14 12 11
17 17 H 1.48494 * 109.47205 * 90.00045 * 16 14 12
18 18 H 1.48500 * 109.46990 * 209.99737 * 16 14 12
19 19 H 1.48492 * 109.46924 * 329.99683 * 16 14 12
20 20 H 1.09007 * 109.46906 * 179.97438 * 1 2 3
21 21 H 1.09000 * 109.47666 * 300.00179 * 1 2 3
22 22 H 1.08998 * 109.47353 * 60.00113 * 1 2 3
23 23 H 1.08998 * 109.47358 * 240.00531 * 2 1 3
24 24 H 1.08998 * 109.47353 * 119.99887 * 2 1 3
25 25 H 1.08002 * 125.19332 * 179.85146 * 6 4 3
26 26 H 1.08997 * 109.46924 * 239.99973 * 10 9 8
27 27 H 1.08996 * 109.47471 * 0.02562 * 10 9 8
28 28 H 1.09001 * 109.46732 * 299.99282 * 11 10 9
29 29 H 1.08996 * 109.47000 * 59.99696 * 11 10 9
30 30 H 0.96996 * 120.00319 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 7 2.3871 2.1492 -1.1173
5 1 2.3672 1.8657 -2.0447
6 6 2.7798 3.3646 -0.6512
7 7 2.6690 3.3921 0.6468
8 6 2.2054 2.1993 1.0991
9 7 1.9768 1.8817 2.3469
10 6 2.2241 2.8602 3.4088
11 6 0.9211 3.1355 4.1621
12 6 1.1756 4.1416 5.2549
13 1 2.1673 4.5446 5.3976
14 6 0.1420 4.5482 6.0718
15 7 -1.0660 4.0586 5.8971
16 14 0.4573 5.7959 7.4259
17 1 0.2468 7.1666 6.8950
18 1 -0.4798 5.5518 8.5518
19 1 1.8555 5.6609 7.9075
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3634 0.5138 0.8899
22 1 -0.3634 0.5138 -0.8900
23 1 1.8933 -0.5137 -0.8900
24 1 1.8933 -0.5138 0.8900
25 1 3.1262 4.1839 -1.2637
26 1 2.9674 2.4650 4.1011
27 1 2.5925 3.7874 2.9700
28 1 0.1778 3.5308 3.4697
29 1 0.5523 2.2084 4.6008
30 1 -1.7931 4.3450 6.4716
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001262691276.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:44:04
Heat of formation + Delta-G solvation = 111.192572 kcal
Electronic energy + Delta-G solvation = -13450.790468 eV
Core-core repulsion = 11091.070349 eV
Total energy + Delta-G solvation = -2359.720119 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.118 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-41.17396 -34.95516 -34.64611 -32.82799 -31.13262 -29.90116 -28.05353 -24.44116
-23.60296 -22.18331 -20.79880 -19.21904 -18.01577 -16.16137 -15.67859 -15.27947
-14.88792 -14.31129 -13.95674 -13.87359 -12.91549 -12.69976 -12.11324 -11.99608
-11.37836 -11.21071 -10.88841 -10.70342 -10.34331 -10.27470 -9.87527 -9.72865
-9.28511 -9.00451 -8.31921 -8.10638 -6.76183 -5.81924 -3.83461 1.75349
1.87224 3.43670 3.48391 3.53299 3.89721 4.03139 4.60330 4.65444
4.84005 5.16487 5.27917 5.34478 5.53067 5.63004 5.78259 5.92240
6.28210 6.48144 6.85901 6.95763 7.06725 7.36515 7.73534 7.92763
8.10853 8.23914 8.36118 8.63324 9.05467 9.25089 9.78720 11.29565
Molecular weight = 210.12amu
Principal moments of inertia in cm(-1)
A = 0.046778 B = 0.006593 C = 0.006087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 598.427295 B = 4246.123238 C = 4598.572035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.167 3.833
3 N -0.453 5.453
4 N -0.530 5.530
5 H 0.437 0.563
6 C 0.353 3.647
7 N -0.561 5.561
8 C 0.506 3.494
9 N -0.578 5.578
10 C 0.082 3.918
11 C 0.035 3.965
12 C -0.513 4.513
13 H 0.055 0.945
14 C 0.055 3.945
15 N -0.897 5.897
16 Si 0.892 3.108
17 H -0.281 1.281
18 H -0.287 1.287
19 H -0.274 1.274
20 H 0.069 0.931
21 H 0.073 0.927
22 H 0.050 0.950
23 H 0.072 0.928
24 H 0.098 0.902
25 H 0.223 0.777
26 H 0.055 0.945
27 H 0.043 0.957
28 H 0.010 0.990
29 H 0.019 0.981
30 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.229 -5.887 -18.345 20.248
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.045 3.955
3 N -0.269 5.269
4 N -0.261 5.261
5 H 0.282 0.718
6 C 0.054 3.946
7 N -0.295 5.295
8 C 0.140 3.860
9 N -0.312 5.312
10 C -0.048 4.048
11 C -0.002 4.002
12 C -0.552 4.552
13 H 0.073 0.927
14 C -0.145 4.145
15 N -0.537 5.537
16 Si 0.720 3.280
17 H -0.208 1.208
18 H -0.213 1.213
19 H -0.199 1.199
20 H 0.088 0.912
21 H 0.092 0.908
22 H 0.069 0.931
23 H 0.090 0.910
24 H 0.116 0.884
25 H 0.239 0.761
26 H 0.073 0.927
27 H 0.061 0.939
28 H 0.028 0.972
29 H 0.037 0.963
30 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 5.826 -6.226 -16.957 18.980
hybrid contribution 0.056 0.720 -0.538 0.901
sum 5.882 -5.506 -17.495 19.261
Atomic orbital electron populations
1.22274 0.95602 1.02281 1.03226 1.21331 0.94309 0.76774 1.03114
1.47325 1.71355 1.11092 0.97115 1.45004 1.66625 1.11204 1.03222
0.71821 1.25540 0.90023 0.86429 0.92612 1.71766 1.26368 1.22722
1.08669 1.20713 0.94057 0.82429 0.88795 1.72373 1.28808 1.34686
0.95349 1.21941 1.00149 0.92043 0.90623 1.19020 0.91053 0.96302
0.93869 1.21258 0.95173 1.23929 1.14885 0.92687 1.25011 0.95160
0.96683 0.97672 1.69996 1.00375 1.43956 1.39370 0.86589 0.78006
0.81691 0.81681 1.20766 1.21332 1.19859 0.91215 0.90775 0.93064
0.91011 0.88401 0.76130 0.92696 0.93888 0.97197 0.96309 0.93225
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.05 10.24 37.15 0.38 -1.67 16
2 C 0.17 1.93 7.22 -4.05 -0.03 1.90 16
3 N -0.45 -6.57 3.76 -61.94 -0.23 -6.81 16
4 N -0.53 -5.19 7.39 29.73 0.22 -4.97 16
5 H 0.44 2.19 8.96 -182.29 -1.63 0.55 16
6 C 0.35 3.88 13.06 -89.69 -1.17 2.71 16
7 N -0.56 -10.18 10.12 -14.66 -0.15 -10.33 16
8 C 0.51 10.09 8.50 -320.86 -2.73 7.36 16
9 N -0.58 -13.65 10.57 -61.93 -0.65 -14.31 16
10 C 0.08 2.14 6.33 -4.04 -0.03 2.11 16
11 C 0.04 1.07 5.30 -27.88 -0.15 0.92 16
12 C -0.51 -16.03 9.11 -34.44 -0.31 -16.34 16
13 H 0.05 1.66 7.74 -52.49 -0.41 1.25 16
14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16
15 N -0.90 -28.98 13.29 55.43 0.74 -28.24 16
16 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16
17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16
18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16
19 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16
20 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16
21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
24 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
25 H 0.22 1.07 8.06 -52.49 -0.42 0.64 16
26 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16
27 H 0.04 1.13 7.02 -51.93 -0.36 0.76 16
28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16
LS Contribution 266.42 15.07 4.01 4.01
Total: -1.00 -39.74 266.42 -10.56 -50.31
By element:
Atomic # 1 Polarization: -0.93 SS G_CDS: -5.34 Total: -6.27 kcal
Atomic # 6 Polarization: 2.72 SS G_CDS: -4.13 Total: -1.41 kcal
Atomic # 7 Polarization: -64.56 SS G_CDS: -0.08 Total: -64.64 kcal
Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal
Total LS contribution 4.01 Total: 4.01 kcal
Total: -39.74 -10.56 -50.31 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001262691276.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 161.498 kcal
(2) G-P(sol) polarization free energy of solvation -39.743 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) 111.193 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds