Wall clock time and date at job start Sun Mar 29 2020 21:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46970 * 2 1 4 4 N 1.40508 * 127.07186 * 265.30306 * 3 2 1 5 5 H 0.96996 * 126.52232 * 0.03063 * 4 3 2 6 6 C 1.35968 * 106.96576 * 180.15150 * 4 3 2 7 7 N 1.30303 * 109.62124 * 359.58006 * 6 4 3 8 8 C 1.35732 * 110.02666 * 0.26832 * 7 6 4 9 9 N 1.30764 * 126.23547 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.47042 * 120.00236 * 10 9 8 12 12 C 1.50701 * 109.46988 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99792 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00595 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99831 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47205 * 90.00045 * 16 14 12 18 18 H 1.48500 * 109.46990 * 209.99737 * 16 14 12 19 19 H 1.48492 * 109.46924 * 329.99683 * 16 14 12 20 20 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47666 * 300.00179 * 1 2 3 22 22 H 1.08998 * 109.47353 * 60.00113 * 1 2 3 23 23 H 1.08998 * 109.47358 * 240.00531 * 2 1 3 24 24 H 1.08998 * 109.47353 * 119.99887 * 2 1 3 25 25 H 1.08002 * 125.19332 * 179.85146 * 6 4 3 26 26 H 1.08997 * 109.46924 * 239.99973 * 10 9 8 27 27 H 1.08996 * 109.47471 * 0.02562 * 10 9 8 28 28 H 1.09001 * 109.46732 * 299.99282 * 11 10 9 29 29 H 1.08996 * 109.47000 * 59.99696 * 11 10 9 30 30 H 0.96996 * 120.00319 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3871 2.1492 -1.1173 5 1 2.3672 1.8657 -2.0447 6 6 2.7798 3.3646 -0.6512 7 7 2.6690 3.3921 0.6468 8 6 2.2054 2.1993 1.0991 9 7 1.9768 1.8817 2.3469 10 6 2.2241 2.8602 3.4088 11 6 0.9211 3.1355 4.1621 12 6 1.1756 4.1416 5.2549 13 1 2.1673 4.5446 5.3976 14 6 0.1420 4.5482 6.0718 15 7 -1.0660 4.0586 5.8971 16 14 0.4573 5.7959 7.4259 17 1 0.2468 7.1666 6.8950 18 1 -0.4798 5.5518 8.5518 19 1 1.8555 5.6609 7.9075 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.1262 4.1839 -1.2637 26 1 2.9674 2.4650 4.1011 27 1 2.5925 3.7874 2.9700 28 1 0.1778 3.5308 3.4697 29 1 0.5523 2.2084 4.6008 30 1 -1.7931 4.3450 6.4716 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262691276.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:04 Heat of formation + Delta-G solvation = 111.192572 kcal Electronic energy + Delta-G solvation = -13450.790468 eV Core-core repulsion = 11091.070349 eV Total energy + Delta-G solvation = -2359.720119 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.17396 -34.95516 -34.64611 -32.82799 -31.13262 -29.90116 -28.05353 -24.44116 -23.60296 -22.18331 -20.79880 -19.21904 -18.01577 -16.16137 -15.67859 -15.27947 -14.88792 -14.31129 -13.95674 -13.87359 -12.91549 -12.69976 -12.11324 -11.99608 -11.37836 -11.21071 -10.88841 -10.70342 -10.34331 -10.27470 -9.87527 -9.72865 -9.28511 -9.00451 -8.31921 -8.10638 -6.76183 -5.81924 -3.83461 1.75349 1.87224 3.43670 3.48391 3.53299 3.89721 4.03139 4.60330 4.65444 4.84005 5.16487 5.27917 5.34478 5.53067 5.63004 5.78259 5.92240 6.28210 6.48144 6.85901 6.95763 7.06725 7.36515 7.73534 7.92763 8.10853 8.23914 8.36118 8.63324 9.05467 9.25089 9.78720 11.29565 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.046778 B = 0.006593 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.427295 B = 4246.123238 C = 4598.572035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.167 3.833 3 N -0.453 5.453 4 N -0.530 5.530 5 H 0.437 0.563 6 C 0.353 3.647 7 N -0.561 5.561 8 C 0.506 3.494 9 N -0.578 5.578 10 C 0.082 3.918 11 C 0.035 3.965 12 C -0.513 4.513 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.223 0.777 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.010 0.990 29 H 0.019 0.981 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -5.887 -18.345 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.045 3.955 3 N -0.269 5.269 4 N -0.261 5.261 5 H 0.282 0.718 6 C 0.054 3.946 7 N -0.295 5.295 8 C 0.140 3.860 9 N -0.312 5.312 10 C -0.048 4.048 11 C -0.002 4.002 12 C -0.552 4.552 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.088 0.912 21 H 0.092 0.908 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.239 0.761 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.037 0.963 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.826 -6.226 -16.957 18.980 hybrid contribution 0.056 0.720 -0.538 0.901 sum 5.882 -5.506 -17.495 19.261 Atomic orbital electron populations 1.22274 0.95602 1.02281 1.03226 1.21331 0.94309 0.76774 1.03114 1.47325 1.71355 1.11092 0.97115 1.45004 1.66625 1.11204 1.03222 0.71821 1.25540 0.90023 0.86429 0.92612 1.71766 1.26368 1.22722 1.08669 1.20713 0.94057 0.82429 0.88795 1.72373 1.28808 1.34686 0.95349 1.21941 1.00149 0.92043 0.90623 1.19020 0.91053 0.96302 0.93869 1.21258 0.95173 1.23929 1.14885 0.92687 1.25011 0.95160 0.96683 0.97672 1.69996 1.00375 1.43956 1.39370 0.86589 0.78006 0.81691 0.81681 1.20766 1.21332 1.19859 0.91215 0.90775 0.93064 0.91011 0.88401 0.76130 0.92696 0.93888 0.97197 0.96309 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.15 0.38 -1.67 16 2 C 0.17 1.93 7.22 -4.05 -0.03 1.90 16 3 N -0.45 -6.57 3.76 -61.94 -0.23 -6.81 16 4 N -0.53 -5.19 7.39 29.73 0.22 -4.97 16 5 H 0.44 2.19 8.96 -182.29 -1.63 0.55 16 6 C 0.35 3.88 13.06 -89.69 -1.17 2.71 16 7 N -0.56 -10.18 10.12 -14.66 -0.15 -10.33 16 8 C 0.51 10.09 8.50 -320.86 -2.73 7.36 16 9 N -0.58 -13.65 10.57 -61.93 -0.65 -14.31 16 10 C 0.08 2.14 6.33 -4.04 -0.03 2.11 16 11 C 0.04 1.07 5.30 -27.88 -0.15 0.92 16 12 C -0.51 -16.03 9.11 -34.44 -0.31 -16.34 16 13 H 0.05 1.66 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -28.98 13.29 55.43 0.74 -28.24 16 16 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 20 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.22 1.07 8.06 -52.49 -0.42 0.64 16 26 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.04 1.13 7.02 -51.93 -0.36 0.76 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 LS Contribution 266.42 15.07 4.01 4.01 Total: -1.00 -39.74 266.42 -10.56 -50.31 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -5.34 Total: -6.27 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -4.13 Total: -1.41 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.08 Total: -64.64 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -39.74 -10.56 -50.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262691276.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.498 kcal (2) G-P(sol) polarization free energy of solvation -39.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds