Wall clock time and date at job start Sun Mar 29 2020 21:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46970 * 2 1 4 4 N 1.40508 * 127.07186 * 265.30306 * 3 2 1 5 5 H 0.96996 * 126.52232 * 0.03063 * 4 3 2 6 6 C 1.35968 * 106.96576 * 180.15150 * 4 3 2 7 7 N 1.30303 * 109.62124 * 359.58006 * 6 4 3 8 8 C 1.35732 * 110.02666 * 0.26832 * 7 6 4 9 9 N 1.30764 * 126.23547 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.47042 * 120.00236 * 10 9 8 12 12 C 1.50701 * 109.46988 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99792 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00595 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99831 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47205 * 90.00045 * 16 14 12 18 18 H 1.48500 * 109.46990 * 209.99737 * 16 14 12 19 19 H 1.48492 * 109.46924 * 329.99683 * 16 14 12 20 20 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47666 * 300.00179 * 1 2 3 22 22 H 1.08998 * 109.47353 * 60.00113 * 1 2 3 23 23 H 1.08998 * 109.47358 * 240.00531 * 2 1 3 24 24 H 1.08998 * 109.47353 * 119.99887 * 2 1 3 25 25 H 1.08002 * 125.19332 * 179.85146 * 6 4 3 26 26 H 1.08997 * 109.46924 * 239.99973 * 10 9 8 27 27 H 1.08996 * 109.47471 * 0.02562 * 10 9 8 28 28 H 1.09001 * 109.46732 * 299.99282 * 11 10 9 29 29 H 1.08996 * 109.47000 * 59.99696 * 11 10 9 30 30 H 0.96996 * 120.00319 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3871 2.1492 -1.1173 5 1 2.3672 1.8657 -2.0447 6 6 2.7798 3.3646 -0.6512 7 7 2.6690 3.3921 0.6468 8 6 2.2054 2.1993 1.0991 9 7 1.9768 1.8817 2.3469 10 6 2.2241 2.8602 3.4088 11 6 0.9211 3.1355 4.1621 12 6 1.1756 4.1416 5.2549 13 1 2.1673 4.5446 5.3976 14 6 0.1420 4.5482 6.0718 15 7 -1.0660 4.0586 5.8971 16 14 0.4573 5.7959 7.4259 17 1 0.2468 7.1666 6.8950 18 1 -0.4798 5.5518 8.5518 19 1 1.8555 5.6609 7.9075 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.1262 4.1839 -1.2637 26 1 2.9674 2.4650 4.1011 27 1 2.5925 3.7874 2.9700 28 1 0.1778 3.5308 3.4697 29 1 0.5523 2.2084 4.6008 30 1 -1.7931 4.3450 6.4716 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262691276.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:04 Heat of formation + Delta-G solvation = 82.632124 kcal Electronic energy + Delta-G solvation = -13452.028942 eV Core-core repulsion = 11091.070349 eV Total energy + Delta-G solvation = -2360.958593 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.37938 -36.73013 -35.72596 -34.94687 -32.67952 -31.37347 -29.72534 -26.47030 -24.78359 -23.40786 -22.65300 -20.69440 -19.15562 -18.47531 -16.89402 -16.59520 -16.37232 -16.09654 -15.45958 -15.12123 -14.67054 -14.20692 -13.80360 -13.50831 -13.01786 -12.92298 -12.64768 -12.24932 -12.22425 -11.86157 -11.43055 -11.37645 -11.31145 -10.94732 -10.58357 -9.93535 -8.27582 -8.12913 -6.32958 0.68594 0.78942 1.38779 1.43448 1.55033 2.41212 2.52445 3.02363 3.11928 3.74201 3.95347 4.06949 4.19971 4.41205 4.50829 4.74217 4.77958 4.85696 5.00422 5.16798 5.23862 5.39690 5.45350 5.67545 5.71947 5.88603 6.25146 6.75799 6.83273 7.18685 7.35533 7.55869 8.93754 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.046778 B = 0.006593 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.427295 B = 4246.123238 C = 4598.572035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.159 3.841 3 N -0.452 5.452 4 N -0.496 5.496 5 H 0.465 0.535 6 C 0.384 3.616 7 N -0.637 5.637 8 C 0.512 3.488 9 N -0.645 5.645 10 C 0.109 3.891 11 C 0.050 3.950 12 C -0.545 4.545 13 H 0.061 0.939 14 C -0.004 4.004 15 N -0.937 5.937 16 Si 0.978 3.022 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.261 1.261 20 H 0.097 0.903 21 H 0.021 0.979 22 H 0.064 0.936 23 H 0.125 0.875 24 H 0.080 0.920 25 H 0.289 0.711 26 H 0.043 0.957 27 H 0.033 0.967 28 H -0.030 1.030 29 H -0.017 1.017 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.338 -5.225 -20.767 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 N -0.265 5.265 4 N -0.227 5.227 5 H 0.316 0.684 6 C 0.088 3.912 7 N -0.375 5.375 8 C 0.145 3.855 9 N -0.385 5.385 10 C -0.021 4.021 11 C 0.013 3.987 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.577 5.577 16 Si 0.801 3.199 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.185 1.185 20 H 0.115 0.885 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.143 0.857 24 H 0.098 0.902 25 H 0.304 0.696 26 H 0.061 0.939 27 H 0.051 0.949 28 H -0.011 1.011 29 H 0.001 0.999 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.942 -5.621 -19.548 21.492 hybrid contribution -0.295 0.448 -0.147 0.556 sum 6.647 -5.173 -19.695 21.420 Atomic orbital electron populations 1.22197 0.95712 1.03490 1.01191 1.21633 0.94140 0.75486 1.04892 1.47665 1.69514 1.11815 0.97544 1.45199 1.63953 1.10267 1.03307 0.68360 1.26841 0.85919 0.87327 0.91066 1.71739 1.30749 1.22629 1.12353 1.20980 0.91523 0.83807 0.89144 1.72255 1.35413 1.34161 0.96662 1.21336 0.96976 0.92391 0.91431 1.18803 0.92361 0.94228 0.93350 1.21629 0.95898 1.24872 1.15916 0.92076 1.26138 0.94511 0.98922 1.00538 1.70155 1.01593 1.45322 1.40640 0.85262 0.78589 0.78403 0.77620 1.19343 1.20195 1.18479 0.88486 0.95963 0.91714 0.85671 0.90174 0.69641 0.93877 0.94879 1.01133 0.99895 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 10.24 71.98 0.74 -3.04 16 2 C 0.16 3.38 7.22 86.38 0.62 4.01 16 3 N -0.45 -12.36 3.76 -349.88 -1.32 -13.67 16 4 N -0.50 -7.56 7.39 -59.84 -0.44 -8.00 16 5 H 0.46 1.90 8.96 -213.06 -1.91 -0.01 16 6 C 0.38 6.96 13.06 180.02 2.35 9.31 16 7 N -0.64 -22.69 10.12 -200.31 -2.03 -24.72 16 8 C 0.51 20.80 8.50 260.80 2.22 23.02 16 9 N -0.64 -32.53 10.57 -349.85 -3.70 -36.23 16 10 C 0.11 6.14 6.33 86.38 0.55 6.68 16 11 C 0.05 3.28 5.30 29.85 0.16 3.44 16 12 C -0.54 -35.55 9.11 25.60 0.23 -35.32 16 13 H 0.06 3.81 7.74 -2.91 -0.02 3.79 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 15 N -0.94 -62.63 13.29 21.45 0.28 -62.34 16 16 Si 0.98 47.94 29.54 68.60 2.03 49.97 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 20 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.29 0.95 8.06 -2.91 -0.02 0.93 16 26 H 0.04 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.03 1.85 7.02 -2.39 -0.02 1.83 16 28 H -0.03 -2.11 8.14 -2.39 -0.02 -2.13 16 29 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 30 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -95.56 266.42 1.38 -94.18 By element: Atomic # 1 Polarization: -6.72 SS G_CDS: -0.78 Total: -7.50 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 7.33 Total: 8.32 kcal Atomic # 7 Polarization: -137.77 SS G_CDS: -7.20 Total: -144.96 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -95.56 1.38 -94.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262691276.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.808 kcal (2) G-P(sol) polarization free energy of solvation -95.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds