Wall clock time and date at job start Sun Mar 29 2020 21:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48630 * 110.99920 * 2 1 4 4 C 1.55169 * 103.38308 * 200.83220 * 3 2 1 5 5 C 1.53612 * 102.62623 * 36.54725 * 4 3 2 6 6 C 1.52882 * 115.51006 * 108.65327 * 5 4 3 7 7 N 1.48164 * 85.83742 * 94.02157 * 6 5 4 8 8 C 1.46900 * 110.99697 * 136.88508 * 7 6 5 9 9 C 1.50694 * 109.47469 * 70.41524 * 8 7 6 10 10 H 1.08001 * 120.00168 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00400 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99680 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00370 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46944 * 90.00053 * 13 11 9 15 15 H 1.48497 * 109.47188 * 209.99510 * 13 11 9 16 16 H 1.48496 * 109.47094 * 330.00149 * 13 11 9 17 17 C 1.48161 * 90.95819 * 23.90890 * 7 6 5 18 18 C 1.48194 * 110.99910 * 242.53651 * 2 1 3 19 19 H 1.09000 * 109.46782 * 177.46688 * 1 2 3 20 20 H 1.08992 * 109.47080 * 297.46659 * 1 2 3 21 21 H 1.08995 * 109.47344 * 57.46864 * 1 2 3 22 22 H 1.09001 * 110.63800 * 319.30890 * 3 2 1 23 23 H 1.09003 * 110.63451 * 82.19735 * 3 2 1 24 24 H 1.09003 * 110.77595 * 278.26420 * 4 3 2 25 25 H 1.09003 * 110.77667 * 154.83675 * 4 3 2 26 26 H 1.09008 * 113.81391 * 208.24962 * 6 5 4 27 27 H 1.09005 * 113.81688 * 339.78684 * 6 5 4 28 28 H 1.09005 * 109.46707 * 190.41430 * 8 7 6 29 29 H 1.08998 * 109.47067 * 310.40665 * 8 7 6 30 30 H 0.97004 * 120.00126 * 179.97438 * 12 11 9 31 31 H 1.08996 * 113.81215 * 221.86222 * 17 7 6 32 32 H 1.08992 * 113.92329 * 90.33005 * 17 7 6 33 33 H 1.08994 * 110.03174 * 26.38285 * 18 2 1 34 34 H 1.08998 * 110.02476 * 264.96217 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3876 0.0000 4 6 3.4475 1.2173 -0.5368 5 6 3.2874 0.1071 -1.5864 6 6 3.4160 0.5543 -3.0427 7 7 4.8417 0.1694 -2.9221 8 6 5.2925 -0.5605 -4.1146 9 6 5.3722 0.3873 -5.2835 10 1 5.1135 1.4278 -5.1537 11 6 5.7745 -0.0740 -6.5189 12 7 6.0892 -1.3412 -6.6772 13 14 5.8727 1.1007 -7.9680 14 1 7.2294 1.7017 -8.0269 15 1 5.6053 0.3583 -9.2260 16 1 4.8617 2.1758 -7.8030 17 6 4.5218 -0.7645 -1.8173 18 6 2.0001 -0.6381 -1.2276 19 1 -0.3633 -1.0267 -0.0454 20 1 -0.3633 0.4740 0.9118 21 1 -0.3634 0.5526 -0.8664 22 1 1.4172 2.0234 -0.6651 23 1 2.0100 1.7958 1.0107 24 1 4.1212 0.9019 0.2600 25 1 3.7992 2.1394 -0.9997 26 1 2.8517 -0.0610 -3.7435 27 1 3.2595 1.6229 -3.1905 28 1 6.2767 -0.9899 -3.9272 29 1 4.5852 -1.3583 -4.3412 30 1 6.3718 -1.6658 -7.5464 31 1 5.2390 -0.7377 -0.9969 32 1 4.2901 -1.7770 -2.1475 33 1 1.2774 -0.5467 -2.0384 34 1 2.2178 -1.6891 -1.0377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:10 Heat of formation + Delta-G solvation = 38.816323 kcal Electronic energy + Delta-G solvation = -14179.708378 eV Core-core repulsion = 11920.390133 eV Total energy + Delta-G solvation = -2259.318245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20143 -36.97847 -32.98670 -31.22770 -29.15022 -27.29904 -25.64769 -25.04216 -23.14321 -21.31532 -20.26763 -18.17833 -16.38144 -15.77504 -15.52567 -14.67728 -14.26146 -14.20341 -13.66298 -13.58656 -12.99629 -12.40457 -12.16284 -11.97037 -11.45169 -11.40209 -11.30671 -11.09586 -10.86905 -10.74692 -10.48369 -10.19670 -9.88680 -9.47485 -9.12664 -8.47389 -8.40143 -7.68521 -6.04300 -4.05993 3.31084 3.36789 3.40498 4.09260 4.41449 4.62862 4.76198 4.90644 5.15687 5.31138 5.34098 5.35550 5.42550 5.59197 5.73450 5.78953 5.92288 6.00994 6.10700 6.15230 6.24419 6.28066 6.37755 6.49572 6.65134 6.76445 6.94889 7.06272 7.25886 7.66627 7.91208 8.16344 8.45624 9.01657 9.58428 11.07001 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056039 B = 0.006754 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.531870 B = 4144.425966 C = 4221.229904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.033 3.967 4 C -0.090 4.090 5 C -0.103 4.103 6 C 0.033 3.967 7 N -0.476 5.476 8 C 0.160 3.840 9 C -0.509 4.509 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.014 3.986 18 C 0.047 3.953 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.026 0.974 22 H 0.043 0.957 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.031 0.969 29 H -0.003 1.003 30 H 0.261 0.739 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 2.836 11.318 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.095 4.095 4 C -0.128 4.128 5 C -0.104 4.104 6 C -0.096 4.096 7 N -0.198 5.198 8 C 0.034 3.966 9 C -0.547 4.547 10 H 0.079 0.921 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.116 4.116 18 C -0.081 4.081 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.451 2.911 11.712 14.733 hybrid contribution -0.777 0.184 -1.926 2.085 sum -9.228 3.096 9.786 13.802 Atomic orbital electron populations 1.22496 0.88473 1.01769 1.00565 1.64832 1.07585 1.15153 1.37246 1.23327 0.95869 0.89694 1.00574 1.22121 0.95380 0.98152 0.97138 1.22571 0.94527 0.96816 0.96497 1.23618 0.92211 1.01096 0.92690 1.68567 1.15926 1.28238 1.07109 1.20200 0.95966 0.93187 0.87269 1.21101 1.44781 0.95718 0.93147 0.92089 1.24998 0.95439 0.95203 0.98947 1.69962 1.45898 1.13854 1.24072 0.86494 0.78489 0.80770 0.81647 1.20557 1.21276 1.19900 1.23774 0.95203 0.95415 0.97167 1.22830 0.95565 0.99259 0.90421 0.91555 0.91609 0.95500 0.93883 0.90400 0.90682 0.90363 0.91695 0.90734 0.95062 0.98507 0.92905 0.90420 0.92063 0.93501 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.74 16 2 N -0.52 -6.92 5.56 -238.86 -1.33 -8.24 16 3 C 0.03 0.41 6.58 -1.72 -0.01 0.40 16 4 C -0.09 -1.27 6.44 -25.27 -0.16 -1.43 16 5 C -0.10 -1.66 1.14 -154.44 -0.18 -1.84 16 6 C 0.03 0.64 6.57 -3.19 -0.02 0.62 16 7 N -0.48 -10.55 6.25 -245.07 -1.53 -12.08 16 8 C 0.16 4.27 4.58 -4.98 -0.02 4.25 16 9 C -0.51 -14.61 8.84 -34.44 -0.30 -14.92 16 10 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 13 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.01 0.25 7.16 -3.20 -0.02 0.23 16 18 C 0.05 0.68 6.26 -3.10 -0.02 0.66 16 19 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.03 0.29 8.01 -51.93 -0.42 -0.13 16 22 H 0.04 0.52 7.95 -51.93 -0.41 0.11 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 25 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 26 H 0.06 1.33 7.78 -51.92 -0.40 0.93 16 27 H 0.07 1.41 8.00 -51.93 -0.42 1.00 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.00 -0.08 7.71 -51.93 -0.40 -0.48 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 32 H 0.06 1.13 7.76 -51.93 -0.40 0.73 16 33 H 0.05 0.67 7.54 -51.93 -0.39 0.28 16 34 H 0.08 1.13 7.91 -51.93 -0.41 0.72 16 LS Contribution 273.67 15.07 4.12 4.12 Total: -1.00 -30.20 273.67 -9.03 -39.22 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.73 Total: -3.81 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.27 Total: -9.79 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -2.12 Total: -46.63 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.20 -9.03 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.041 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds