Wall clock time and date at job start Sun Mar 29 2020 21:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48630 * 110.99920 * 2 1 4 4 C 1.55169 * 103.38308 * 200.83220 * 3 2 1 5 5 C 1.53612 * 102.62623 * 36.54725 * 4 3 2 6 6 C 1.52882 * 115.51006 * 108.65327 * 5 4 3 7 7 N 1.48164 * 85.83742 * 94.02157 * 6 5 4 8 8 C 1.46900 * 110.99697 * 136.88508 * 7 6 5 9 9 C 1.50694 * 109.47469 * 70.41524 * 8 7 6 10 10 H 1.08001 * 120.00168 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00400 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99680 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00370 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46944 * 90.00053 * 13 11 9 15 15 H 1.48497 * 109.47188 * 209.99510 * 13 11 9 16 16 H 1.48496 * 109.47094 * 330.00149 * 13 11 9 17 17 C 1.48161 * 90.95819 * 23.90890 * 7 6 5 18 18 C 1.48194 * 110.99910 * 242.53651 * 2 1 3 19 19 H 1.09000 * 109.46782 * 177.46688 * 1 2 3 20 20 H 1.08992 * 109.47080 * 297.46659 * 1 2 3 21 21 H 1.08995 * 109.47344 * 57.46864 * 1 2 3 22 22 H 1.09001 * 110.63800 * 319.30890 * 3 2 1 23 23 H 1.09003 * 110.63451 * 82.19735 * 3 2 1 24 24 H 1.09003 * 110.77595 * 278.26420 * 4 3 2 25 25 H 1.09003 * 110.77667 * 154.83675 * 4 3 2 26 26 H 1.09008 * 113.81391 * 208.24962 * 6 5 4 27 27 H 1.09005 * 113.81688 * 339.78684 * 6 5 4 28 28 H 1.09005 * 109.46707 * 190.41430 * 8 7 6 29 29 H 1.08998 * 109.47067 * 310.40665 * 8 7 6 30 30 H 0.97004 * 120.00126 * 179.97438 * 12 11 9 31 31 H 1.08996 * 113.81215 * 221.86222 * 17 7 6 32 32 H 1.08992 * 113.92329 * 90.33005 * 17 7 6 33 33 H 1.08994 * 110.03174 * 26.38285 * 18 2 1 34 34 H 1.08998 * 110.02476 * 264.96217 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3876 0.0000 4 6 3.4475 1.2173 -0.5368 5 6 3.2874 0.1071 -1.5864 6 6 3.4160 0.5543 -3.0427 7 7 4.8417 0.1694 -2.9221 8 6 5.2925 -0.5605 -4.1146 9 6 5.3722 0.3873 -5.2835 10 1 5.1135 1.4278 -5.1537 11 6 5.7745 -0.0740 -6.5189 12 7 6.0892 -1.3412 -6.6772 13 14 5.8727 1.1007 -7.9680 14 1 7.2294 1.7017 -8.0269 15 1 5.6053 0.3583 -9.2260 16 1 4.8617 2.1758 -7.8030 17 6 4.5218 -0.7645 -1.8173 18 6 2.0001 -0.6381 -1.2276 19 1 -0.3633 -1.0267 -0.0454 20 1 -0.3633 0.4740 0.9118 21 1 -0.3634 0.5526 -0.8664 22 1 1.4172 2.0234 -0.6651 23 1 2.0100 1.7958 1.0107 24 1 4.1212 0.9019 0.2600 25 1 3.7992 2.1394 -0.9997 26 1 2.8517 -0.0610 -3.7435 27 1 3.2595 1.6229 -3.1905 28 1 6.2767 -0.9899 -3.9272 29 1 4.5852 -1.3583 -4.3412 30 1 6.3718 -1.6658 -7.5464 31 1 5.2390 -0.7377 -0.9969 32 1 4.2901 -1.7770 -2.1475 33 1 1.2774 -0.5467 -2.0384 34 1 2.2178 -1.6891 -1.0377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:10 Heat of formation + Delta-G solvation = 15.852628 kcal Electronic energy + Delta-G solvation = -14180.704158 eV Core-core repulsion = 11920.390133 eV Total energy + Delta-G solvation = -2260.314026 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.62119 -38.26827 -35.08703 -32.64442 -30.56959 -28.85552 -27.21851 -26.47996 -24.75249 -22.59688 -21.80308 -19.54082 -18.57946 -17.07356 -16.89635 -16.39354 -15.80205 -15.51631 -15.18075 -14.94753 -14.16466 -14.12913 -13.68967 -13.51266 -13.01216 -12.95033 -12.63985 -12.42520 -12.36626 -12.27590 -12.15529 -11.82390 -11.36168 -11.25650 -11.04087 -10.66701 -9.55717 -9.36328 -8.25835 -6.36905 1.37815 1.39873 1.50877 2.36914 3.05434 3.06907 3.19788 3.40800 3.64723 3.93704 4.23737 4.34094 4.42671 4.48465 4.58463 4.65002 4.72819 4.74089 4.75548 4.89208 4.92714 5.00074 5.03044 5.05381 5.12566 5.21691 5.34123 5.51513 5.76546 5.87449 6.09362 6.12224 6.42125 6.78460 7.33251 8.86035 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056039 B = 0.006754 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.531870 B = 4144.425966 C = 4221.229904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.531 5.531 3 C 0.038 3.962 4 C -0.089 4.089 5 C -0.085 4.085 6 C 0.031 3.969 7 N -0.491 5.491 8 C 0.176 3.824 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.972 3.028 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.264 1.264 17 C 0.012 3.988 18 C 0.052 3.948 19 H 0.071 0.929 20 H 0.083 0.917 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.000 1.000 29 H -0.028 1.028 30 H 0.266 0.734 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 4.127 12.059 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.255 5.255 3 C -0.089 4.089 4 C -0.127 4.127 5 C -0.086 4.086 6 C -0.098 4.098 7 N -0.213 5.213 8 C 0.048 3.952 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.117 4.117 18 C -0.077 4.077 19 H 0.090 0.910 20 H 0.102 0.898 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.117 0.883 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.018 0.982 29 H -0.010 1.010 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.504 4.208 12.477 16.239 hybrid contribution -0.457 -0.246 -2.103 2.167 sum -9.961 3.962 10.373 14.917 Atomic orbital electron populations 1.22573 0.86847 1.02471 1.01502 1.64866 1.09168 1.15518 1.35984 1.23347 0.94317 0.89446 1.01794 1.22142 0.97055 0.96985 0.96508 1.22393 0.94422 0.96901 0.94860 1.23615 0.90257 1.00995 0.94973 1.68489 1.17954 1.28809 1.06082 1.19859 0.93770 0.92541 0.88989 1.21397 1.45186 0.95865 0.94276 0.92293 1.25954 0.94659 0.96993 1.02038 1.70087 1.46415 1.15821 1.25067 0.85348 0.78882 0.78520 0.77672 1.19725 1.20468 1.18874 1.23858 0.96885 0.94992 0.95997 1.22723 0.94534 0.99171 0.91246 0.91000 0.89822 0.95435 0.93496 0.88269 0.89965 0.90722 0.93316 0.90334 0.98202 1.00996 0.92547 0.89015 0.92652 0.93594 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.40 127.69 1.20 1.47 16 2 N -0.53 -12.59 5.56 -909.62 -5.06 -17.65 16 3 C 0.04 0.84 6.58 86.71 0.57 1.41 16 4 C -0.09 -2.33 6.44 31.54 0.20 -2.12 16 5 C -0.08 -2.65 1.14 -52.01 -0.06 -2.71 16 6 C 0.03 1.20 6.57 86.02 0.57 1.77 16 7 N -0.49 -22.16 6.25 -929.27 -5.80 -27.96 16 8 C 0.18 9.74 4.58 85.56 0.39 10.13 16 9 C -0.53 -30.98 8.84 25.60 0.23 -30.76 16 10 H 0.06 3.40 7.80 -2.91 -0.02 3.37 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 13 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 17 C 0.01 0.43 7.16 86.01 0.62 1.05 16 18 C 0.05 1.41 6.26 86.06 0.54 1.95 16 19 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.03 0.52 8.01 -2.39 -0.02 0.50 16 22 H 0.05 1.00 7.95 -2.39 -0.02 0.98 16 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 25 H 0.07 2.02 7.87 -2.39 -0.02 2.00 16 26 H 0.05 2.05 7.78 -2.38 -0.02 2.03 16 27 H 0.08 2.96 8.00 -2.38 -0.02 2.94 16 28 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 29 H -0.03 -1.63 7.71 -2.39 -0.02 -1.65 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 31 H 0.09 3.08 8.04 -2.39 -0.02 3.06 16 32 H 0.06 2.10 7.76 -2.39 -0.02 2.08 16 33 H 0.05 1.27 7.54 -2.39 -0.02 1.25 16 34 H 0.08 2.18 7.91 -2.39 -0.02 2.16 16 Total: -1.00 -64.88 273.67 -2.80 -67.68 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.04 Total: 5.17 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.71 Total: -17.25 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -10.58 Total: -102.56 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.88 -2.80 -67.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.528 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds