Wall clock time and date at job start Sun Mar 29 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46856 * 111.00006 * 2 1 4 4 C 1.54049 * 108.86161 * 181.73759 * 3 2 1 5 5 H 1.08999 * 113.16479 * 169.41878 * 4 3 2 6 6 C 1.56846 * 106.66193 * 294.45119 * 4 3 2 7 7 C 1.55314 * 99.42248 * 71.07080 * 6 4 3 8 8 H 1.08994 * 112.70249 * 164.90362 * 7 6 4 9 9 C 1.46812 * 110.99687 * 125.67893 * 2 1 3 10 10 N 1.48308 * 103.99075 * 42.58145 * 7 6 4 11 11 C 1.46903 * 110.99687 * 210.89776 * 10 7 6 12 12 C 1.50694 * 109.47066 * 170.00010 * 11 10 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47551 * 108.01913 * 332.80169 * 10 7 6 21 21 H 1.08998 * 109.47432 * 294.32261 * 1 2 3 22 22 H 1.09000 * 109.47440 * 54.32086 * 1 2 3 23 23 H 1.08997 * 109.47439 * 174.32171 * 1 2 3 24 24 H 1.09004 * 109.57123 * 301.55179 * 3 2 1 25 25 H 1.09001 * 109.57194 * 61.92532 * 3 2 1 26 26 H 1.09004 * 110.85600 * 313.86096 * 6 4 3 27 27 H 1.08996 * 112.28536 * 188.84703 * 6 4 3 28 28 H 1.08999 * 109.52113 * 58.69680 * 9 2 1 29 29 H 1.09003 * 109.57032 * 298.53677 * 9 2 1 30 30 H 1.09007 * 109.47052 * 49.99695 * 11 10 7 31 31 H 1.09003 * 109.46808 * 290.00387 * 11 10 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.09002 * 110.00394 * 120.37999 * 20 10 7 34 34 H 1.08997 * 110.00437 * 241.73548 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5341 1.3138 -0.0442 5 1 3.9941 2.2842 -0.2308 6 6 3.9987 0.6607 1.3040 7 6 3.5335 -0.7997 1.0528 8 1 3.9797 -1.5091 1.7496 9 6 1.9951 -0.7994 1.1134 10 7 3.9194 -1.0618 -0.3550 11 6 2.9898 -2.0064 -0.9885 12 6 3.2606 -2.0606 -2.4700 13 1 4.0446 -1.4536 -2.8982 14 6 2.5067 -2.8842 -3.2790 15 7 1.5517 -3.6229 -2.7576 16 14 2.8420 -2.9508 -5.1154 17 1 1.9023 -3.9058 -5.7558 18 1 2.6524 -1.6001 -5.7025 19 1 4.2382 -3.3999 -5.3477 20 6 3.9334 0.2277 -1.0721 21 1 -0.3634 0.4233 0.9364 22 1 -0.3634 0.5994 -0.8347 23 1 -0.3634 -1.0226 -0.1017 24 1 1.6244 1.9045 -0.8752 25 1 1.6749 1.8851 0.9062 26 1 3.4740 1.1033 2.1507 27 1 5.0790 0.7145 1.4386 28 1 1.6272 -1.8223 1.0330 29 1 1.6678 -0.3678 2.0593 30 1 1.9647 -1.6769 -0.8183 31 1 3.1290 -2.9977 -0.5572 32 1 1.0211 -4.2021 -3.3268 33 1 4.9277 0.4192 -1.4756 34 1 3.1998 0.2141 -1.8781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:06 Heat of formation + Delta-G solvation = 37.052493 kcal Electronic energy + Delta-G solvation = -15136.813564 eV Core-core repulsion = 12877.418834 eV Total energy + Delta-G solvation = -2259.394730 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.12063 -34.75479 -32.97659 -31.41414 -29.93007 -26.57177 -25.78727 -24.52446 -22.34493 -21.98017 -19.27809 -18.74771 -16.03696 -15.82140 -14.87292 -14.60967 -14.15093 -13.83801 -13.32028 -12.91858 -12.43534 -12.24726 -12.01021 -11.72378 -11.46304 -11.30091 -11.13993 -10.80256 -10.56717 -10.26141 -10.03025 -9.89388 -9.69367 -9.57132 -8.86009 -8.28047 -7.76432 -6.76731 -5.84373 -3.80032 3.42325 3.45768 3.49212 4.33345 4.57735 4.96366 5.11211 5.21110 5.42955 5.52122 5.63593 5.72272 5.78574 5.84036 5.88216 5.92864 6.02433 6.20122 6.26680 6.33945 6.36095 6.50090 6.58133 6.93658 7.09226 7.54028 7.54843 7.57028 7.97593 8.06565 8.27501 8.53742 8.81925 9.27344 9.79561 11.27238 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.011330 C = 0.010502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.407397 B = 2470.808553 C = 2665.446455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.523 5.523 3 C 0.064 3.936 4 C -0.121 4.121 5 H 0.085 0.915 6 C -0.125 4.125 7 C 0.065 3.935 8 H 0.090 0.910 9 C 0.037 3.963 10 N -0.517 5.517 11 C 0.168 3.832 12 C -0.496 4.496 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.890 3.110 17 H -0.290 1.290 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.070 3.930 21 H 0.012 0.988 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.013 0.987 32 H 0.257 0.743 33 H 0.050 0.950 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 9.017 7.226 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.247 5.247 3 C -0.063 4.063 4 C -0.140 4.140 5 H 0.103 0.897 6 C -0.163 4.163 7 C -0.044 4.044 8 H 0.108 0.892 9 C -0.092 4.092 10 N -0.241 5.241 11 C 0.042 3.958 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.216 1.216 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.058 4.058 21 H 0.031 0.969 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.335 8.410 6.711 10.765 hybrid contribution -1.037 0.556 -0.283 1.210 sum -0.703 8.966 6.428 11.055 Atomic orbital electron populations 1.22244 0.87549 1.02653 0.98981 1.61731 1.07017 1.11912 1.44049 1.22272 0.95156 0.89497 0.99413 1.23233 0.94444 0.99417 0.96939 0.89718 1.23205 1.00626 0.96008 0.96470 1.23113 0.91535 0.95301 0.94464 0.89211 1.22787 0.97545 0.98652 0.90224 1.63997 1.51139 1.09900 0.99076 1.20285 0.92872 0.89646 0.92982 1.21202 1.16285 1.23472 0.92571 0.92658 1.24890 0.95458 0.95994 0.98149 1.69949 1.21600 1.27445 1.35084 0.86701 0.77862 0.77558 0.86045 1.21597 1.20533 1.20485 1.22608 0.99837 0.87180 0.96196 0.96932 0.91802 0.90985 0.91050 0.96026 0.92400 0.91063 0.90037 0.96294 0.92933 0.96923 0.93352 0.93153 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.57 60.06 0.58 1.14 16 2 N -0.52 -9.81 1.93 -241.71 -0.47 -10.28 16 3 C 0.06 1.05 4.95 -3.30 -0.02 1.03 16 4 C -0.12 -1.97 4.37 -87.06 -0.38 -2.35 16 5 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 6 C -0.13 -1.94 6.31 -23.42 -0.15 -2.09 16 7 C 0.07 1.21 4.37 -65.21 -0.29 0.92 16 8 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 9 C 0.04 0.67 4.15 -3.37 -0.01 0.66 16 10 N -0.52 -11.63 5.31 -223.19 -1.18 -12.81 16 11 C 0.17 4.44 3.95 -4.98 -0.02 4.42 16 12 C -0.50 -14.28 7.93 -34.44 -0.27 -14.55 16 13 H 0.06 1.59 6.91 -52.49 -0.36 1.22 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 16 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C 0.07 1.45 4.88 -2.53 -0.01 1.43 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 22 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.02 0.32 8.03 -51.93 -0.42 -0.09 16 26 H 0.06 0.80 7.87 -51.93 -0.41 0.40 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.64 7.14 -51.93 -0.37 1.26 16 29 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 30 H 0.05 1.42 4.31 -51.92 -0.22 1.19 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.82 6.09 -51.93 -0.32 1.50 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -30.44 257.27 -8.18 -38.63 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.46 Total: -2.35 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.67 Total: -7.88 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.91 Total: -49.51 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.44 -8.18 -38.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.679 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds