Wall clock time and date at job start Sun Mar 29 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46856 * 111.00006 * 2 1 4 4 C 1.54049 * 108.86161 * 181.73759 * 3 2 1 5 5 H 1.08999 * 113.16479 * 169.41878 * 4 3 2 6 6 C 1.56846 * 106.66193 * 294.45119 * 4 3 2 7 7 C 1.55314 * 99.42248 * 71.07080 * 6 4 3 8 8 H 1.08994 * 112.70249 * 164.90362 * 7 6 4 9 9 C 1.46812 * 110.99687 * 125.67893 * 2 1 3 10 10 N 1.48308 * 103.99075 * 42.58145 * 7 6 4 11 11 C 1.46903 * 110.99687 * 210.89776 * 10 7 6 12 12 C 1.50694 * 109.47066 * 170.00010 * 11 10 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47551 * 108.01913 * 332.80169 * 10 7 6 21 21 H 1.08998 * 109.47432 * 294.32261 * 1 2 3 22 22 H 1.09000 * 109.47440 * 54.32086 * 1 2 3 23 23 H 1.08997 * 109.47439 * 174.32171 * 1 2 3 24 24 H 1.09004 * 109.57123 * 301.55179 * 3 2 1 25 25 H 1.09001 * 109.57194 * 61.92532 * 3 2 1 26 26 H 1.09004 * 110.85600 * 313.86096 * 6 4 3 27 27 H 1.08996 * 112.28536 * 188.84703 * 6 4 3 28 28 H 1.08999 * 109.52113 * 58.69680 * 9 2 1 29 29 H 1.09003 * 109.57032 * 298.53677 * 9 2 1 30 30 H 1.09007 * 109.47052 * 49.99695 * 11 10 7 31 31 H 1.09003 * 109.46808 * 290.00387 * 11 10 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.09002 * 110.00394 * 120.37999 * 20 10 7 34 34 H 1.08997 * 110.00437 * 241.73548 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5341 1.3138 -0.0442 5 1 3.9941 2.2842 -0.2308 6 6 3.9987 0.6607 1.3040 7 6 3.5335 -0.7997 1.0528 8 1 3.9797 -1.5091 1.7496 9 6 1.9951 -0.7994 1.1134 10 7 3.9194 -1.0618 -0.3550 11 6 2.9898 -2.0064 -0.9885 12 6 3.2606 -2.0606 -2.4700 13 1 4.0446 -1.4536 -2.8982 14 6 2.5067 -2.8842 -3.2790 15 7 1.5517 -3.6229 -2.7576 16 14 2.8420 -2.9508 -5.1154 17 1 1.9023 -3.9058 -5.7558 18 1 2.6524 -1.6001 -5.7025 19 1 4.2382 -3.3999 -5.3477 20 6 3.9334 0.2277 -1.0721 21 1 -0.3634 0.4233 0.9364 22 1 -0.3634 0.5994 -0.8347 23 1 -0.3634 -1.0226 -0.1017 24 1 1.6244 1.9045 -0.8752 25 1 1.6749 1.8851 0.9062 26 1 3.4740 1.1033 2.1507 27 1 5.0790 0.7145 1.4386 28 1 1.6272 -1.8223 1.0330 29 1 1.6678 -0.3678 2.0593 30 1 1.9647 -1.6769 -0.8183 31 1 3.1290 -2.9977 -0.5572 32 1 1.0211 -4.2021 -3.3268 33 1 4.9277 0.4192 -1.4756 34 1 3.1998 0.2141 -1.8781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:06 Heat of formation + Delta-G solvation = 16.343804 kcal Electronic energy + Delta-G solvation = -15137.711560 eV Core-core repulsion = 12877.418834 eV Total energy + Delta-G solvation = -2260.292727 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.59337 -36.30346 -34.95497 -33.09527 -31.52202 -28.27970 -27.43566 -26.08105 -24.15413 -23.43525 -20.87967 -20.25035 -18.03088 -17.36691 -16.72958 -16.21142 -15.71533 -15.41151 -14.86338 -14.30922 -14.06055 -13.91805 -13.46507 -13.41427 -13.09332 -12.91328 -12.68387 -12.63819 -12.41977 -12.00747 -11.60712 -11.54341 -11.18293 -11.14504 -11.00939 -10.49660 -9.16386 -8.50401 -8.07746 -6.11002 1.40605 1.43748 1.50892 2.46540 2.99103 3.25590 3.55764 3.73607 3.83561 4.04483 4.22438 4.39937 4.48718 4.50532 4.54473 4.61095 4.78541 4.82593 4.88227 4.99152 5.08656 5.14007 5.25755 5.33115 5.43955 5.48536 5.75453 5.95467 6.17728 6.21888 6.33429 6.55418 6.87543 7.08749 7.53496 9.03456 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.011330 C = 0.010502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.407397 B = 2470.808553 C = 2665.446455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.558 5.558 3 C 0.066 3.934 4 C -0.110 4.110 5 H 0.118 0.882 6 C -0.109 4.109 7 C 0.054 3.946 8 H 0.093 0.907 9 C 0.045 3.955 10 N -0.535 5.535 11 C 0.185 3.815 12 C -0.512 4.512 13 H 0.050 0.950 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.958 3.042 17 H -0.285 1.285 18 H -0.270 1.270 19 H -0.274 1.274 20 C 0.070 3.930 21 H 0.039 0.961 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.049 0.951 31 H -0.031 1.031 32 H 0.258 0.742 33 H 0.049 0.951 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 11.188 7.700 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.283 5.283 3 C -0.062 4.062 4 C -0.130 4.130 5 H 0.136 0.864 6 C -0.147 4.147 7 C -0.055 4.055 8 H 0.111 0.889 9 C -0.084 4.084 10 N -0.259 5.259 11 C 0.059 3.941 12 C -0.550 4.550 13 H 0.068 0.932 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.783 3.217 17 H -0.210 1.210 18 H -0.195 1.195 19 H -0.199 1.199 20 C -0.058 4.058 21 H 0.058 0.942 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.066 0.934 31 H -0.013 1.013 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.784 10.601 7.197 12.837 hybrid contribution -1.158 -0.131 -0.395 1.230 sum -0.374 10.470 6.802 12.491 Atomic orbital electron populations 1.22166 0.86750 1.01406 1.00563 1.61575 1.08132 1.13766 1.44876 1.22317 0.94932 0.88136 1.00780 1.23250 0.94746 0.99379 0.95593 0.86361 1.23154 1.01641 0.92992 0.96867 1.23305 0.92068 0.98010 0.92105 0.88860 1.22612 0.97154 0.97179 0.91467 1.63807 1.50251 1.10630 1.01217 1.19913 0.93601 0.88629 0.91992 1.21518 1.16112 1.23388 0.94020 0.93170 1.25734 0.95213 0.95571 1.02961 1.70086 1.22487 1.28085 1.36764 0.85624 0.77836 0.77947 0.80272 1.21016 1.19515 1.19924 1.22513 0.98782 0.88012 0.96508 0.94249 0.91310 0.93524 0.90877 0.93323 0.89518 0.89906 0.93455 0.93495 0.93389 1.01313 0.93286 0.93259 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 9.57 127.69 1.22 2.50 16 2 N -0.56 -20.46 1.93 -918.64 -1.77 -22.22 16 3 C 0.07 1.93 4.95 86.67 0.43 2.36 16 4 C -0.11 -3.23 4.37 -8.49 -0.04 -3.27 16 5 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 6 C -0.11 -2.96 6.31 32.74 0.21 -2.75 16 7 C 0.05 1.94 4.37 45.76 0.20 2.14 16 8 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 9 C 0.04 1.60 4.15 86.64 0.36 1.96 16 10 N -0.53 -24.28 5.31 -860.05 -4.56 -28.84 16 11 C 0.19 10.21 3.95 85.55 0.34 10.55 16 12 C -0.51 -30.28 7.93 25.60 0.20 -30.08 16 13 H 0.05 2.95 6.91 -2.91 -0.02 2.92 16 14 C 0.00 0.13 5.46 84.66 0.46 0.59 16 15 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 16 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 C 0.07 2.84 4.88 86.78 0.42 3.26 16 21 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.05 1.20 8.03 -2.39 -0.02 1.18 16 26 H 0.09 1.93 7.87 -2.38 -0.02 1.91 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.97 7.14 -2.39 -0.02 1.96 16 29 H 0.05 1.40 8.05 -2.39 -0.02 1.38 16 30 H 0.05 2.71 4.31 -2.38 -0.01 2.70 16 31 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 2.04 6.09 -2.39 -0.01 2.03 16 Total: -1.00 -67.27 257.27 0.84 -66.43 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.06 Total: 6.68 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.81 Total: -12.73 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -6.05 Total: -108.65 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -67.27 0.84 -66.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.769 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds