Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47367 * 111.00142 * 2 1 4 4 C 1.53998 * 108.18877 * 170.63697 * 3 2 1 5 5 H 1.09002 * 114.74113 * 154.37987 * 4 3 2 6 6 C 1.54260 * 110.81159 * 288.19937 * 4 3 2 7 7 C 1.54268 * 84.60558 * 80.14817 * 6 4 3 8 8 H 1.08997 * 116.04899 * 147.38837 * 7 6 4 9 9 C 1.47362 * 111.00088 * 123.42127 * 2 1 3 10 10 N 1.48568 * 110.87990 * 20.43351 * 4 3 2 11 11 C 1.46895 * 110.99920 * 33.09479 * 10 4 3 12 12 C 1.53003 * 109.46877 * 150.65619 * 11 10 4 13 13 C 1.50705 * 109.46676 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00558 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99514 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00203 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00450 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46809 * 89.99963 * 17 15 13 19 19 H 1.48496 * 109.47251 * 210.00053 * 17 15 13 20 20 H 1.48500 * 109.46933 * 330.00200 * 17 15 13 21 21 H 1.09003 * 109.46754 * 60.00038 * 1 2 3 22 22 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47183 * 299.99879 * 1 2 3 24 24 H 1.09000 * 109.71881 * 50.96340 * 3 2 1 25 25 H 1.09003 * 109.71715 * 290.31110 * 3 2 1 26 26 H 1.09005 * 114.01460 * 194.05989 * 6 4 3 27 27 H 1.08999 * 114.01023 * 326.23430 * 6 4 3 28 28 H 1.08999 * 109.71694 * 309.03610 * 9 2 1 29 29 H 1.09000 * 109.72319 * 69.68450 * 9 2 1 30 30 H 1.09000 * 109.46543 * 270.65152 * 11 10 4 31 31 H 1.08997 * 109.47756 * 30.65341 * 11 10 4 32 32 H 1.08998 * 109.47176 * 299.99704 * 12 11 10 33 33 H 1.09001 * 109.47110 * 60.00105 * 12 11 10 34 34 H 0.96997 * 120.00643 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9971 1.3758 0.0000 4 6 3.5171 1.3072 0.2380 5 1 4.0796 2.1521 -0.1592 6 6 3.8261 0.9135 1.6972 7 6 3.5353 -0.5236 1.2177 8 1 4.1055 -1.3151 1.7040 9 6 1.9971 -0.7577 1.1483 10 7 4.0444 -0.0419 -0.0922 11 6 3.2936 -0.6433 -1.2024 12 6 4.2085 -1.5884 -1.9839 13 6 3.4379 -2.2059 -3.1224 14 1 2.3998 -1.9496 -3.2737 15 6 4.0585 -3.0981 -3.9709 16 7 3.3863 -3.6367 -4.9648 17 14 5.8539 -3.5421 -3.7088 18 1 5.9464 -4.7181 -2.8068 19 1 6.4785 -3.8702 -5.0155 20 1 6.5641 -2.3910 -3.0958 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5256 1.9507 0.7970 25 1 1.7964 1.8467 -0.9623 26 1 4.8620 1.0815 1.9921 27 1 3.1056 1.2938 2.4213 28 1 1.5256 -0.4092 2.0671 29 1 1.7964 -1.8203 1.0115 30 1 2.4460 -1.2029 -0.8066 31 1 2.9323 0.1431 -1.8650 32 1 5.0561 -1.0290 -2.3796 33 1 4.5696 -2.3750 -1.3213 34 1 3.8229 -4.2641 -5.5620 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277943495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = 87.440709 kcal Electronic energy + Delta-G solvation = -14668.030955 eV Core-core repulsion = 12410.821221 eV Total energy + Delta-G solvation = -2257.209733 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44575 -35.17630 -33.31620 -31.22025 -29.83060 -27.61471 -27.05389 -23.30526 -22.50413 -22.34146 -19.94597 -18.07656 -16.57267 -16.29139 -15.65180 -14.82113 -14.40059 -13.91709 -13.73830 -13.65300 -12.46900 -12.41774 -12.15902 -12.12573 -11.81070 -11.49145 -11.41483 -11.04372 -10.74217 -10.61237 -10.10996 -9.77479 -9.52171 -9.32468 -8.97540 -8.67630 -8.36632 -7.35334 -5.89079 -3.84378 3.42823 3.49186 3.58524 3.85478 4.44365 4.55631 4.60990 4.76378 4.94723 5.32103 5.35733 5.40262 5.44054 5.46532 5.60775 5.64830 5.75757 5.84791 5.96406 5.98491 6.13018 6.18432 6.24834 6.85188 6.94228 7.07225 7.11725 7.32716 7.44592 7.77247 7.91075 8.05815 8.74660 9.18553 9.75819 11.24689 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040282 B = 0.009355 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.936446 B = 2992.382139 C = 3377.473354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.520 5.520 3 C 0.040 3.960 4 C 0.017 3.983 5 H 0.105 0.895 6 C -0.139 4.139 7 C 0.020 3.980 8 H 0.108 0.892 9 C 0.036 3.964 10 N -0.460 5.460 11 C 0.031 3.969 12 C -0.008 4.008 13 C -0.508 4.508 14 H 0.070 0.930 15 C 0.063 3.937 16 N -0.910 5.910 17 Si 0.879 3.121 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.264 1.264 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.020 0.980 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.010 0.990 33 H 0.004 0.996 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 9.287 14.124 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.089 4.089 4 C -0.093 4.093 5 H 0.123 0.877 6 C -0.176 4.176 7 C -0.091 4.091 8 H 0.126 0.874 9 C -0.092 4.092 10 N -0.182 5.182 11 C -0.096 4.096 12 C -0.046 4.046 13 C -0.546 4.546 14 H 0.088 0.912 15 C -0.137 4.137 16 N -0.551 5.551 17 Si 0.707 3.293 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.189 1.189 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.023 0.977 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.152 8.828 13.314 16.119 hybrid contribution -0.267 0.111 0.752 0.805 sum -2.419 8.939 14.065 16.840 Atomic orbital electron populations 1.22455 0.87773 1.02400 1.00322 1.63914 1.07455 1.12735 1.40280 1.22764 0.94937 0.89714 1.01476 1.23933 0.92937 0.96508 0.95971 0.87692 1.23718 1.01965 0.96342 0.95598 1.24317 0.92660 0.97347 0.94744 0.87382 1.22992 0.95046 0.99795 0.91409 1.69552 1.45597 1.01158 1.01843 1.23146 0.96553 0.98513 0.91397 1.19588 0.95789 0.94350 0.94881 1.21169 0.99020 1.24074 1.10375 0.91176 1.25014 0.97795 0.95880 0.95005 1.69929 1.36686 1.31065 1.17374 0.86771 0.86224 0.79164 0.77110 1.20567 1.21721 1.18866 0.91110 0.91035 0.96159 0.94257 0.89829 0.89100 0.92149 0.94075 0.89523 0.88058 0.92876 0.97126 0.97728 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.56 60.06 0.57 0.81 16 2 N -0.52 -7.83 1.91 -239.64 -0.46 -8.29 16 3 C 0.04 0.55 4.73 -3.05 -0.01 0.53 16 4 C 0.02 0.24 5.28 -66.53 -0.35 -0.11 16 5 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 6 C -0.14 -1.74 7.53 -25.65 -0.19 -1.93 16 7 C 0.02 0.29 5.51 -65.59 -0.36 -0.07 16 8 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 9 C 0.04 0.51 4.68 -2.11 -0.01 0.50 16 10 N -0.46 -8.46 6.21 -231.03 -1.43 -9.89 16 11 C 0.03 0.68 3.69 -3.82 -0.01 0.66 16 12 C -0.01 -0.21 4.37 -27.88 -0.12 -0.33 16 13 C -0.51 -15.28 9.66 -34.44 -0.33 -15.62 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -29.20 13.96 55.43 0.77 -28.42 16 17 Si 0.88 23.14 27.47 -169.99 -4.67 18.47 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.47 8.03 -51.93 -0.42 0.05 16 25 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.66 7.97 -51.93 -0.41 0.25 16 28 H 0.04 0.49 8.02 -51.93 -0.42 0.08 16 29 H 0.09 1.26 7.95 -51.93 -0.41 0.85 16 30 H 0.10 2.20 4.35 -59.37 -0.26 1.94 16 31 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 32 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 33 H 0.00 0.12 7.57 -51.93 -0.39 -0.28 16 34 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -32.75 261.97 -8.35 -41.10 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.58 Total: -3.18 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.92 Total: -13.72 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.12 Total: -46.61 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.67 Total: 18.47 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.75 -8.35 -41.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.537 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds