Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47367 * 111.00142 * 2 1 4 4 C 1.53998 * 108.18877 * 170.63697 * 3 2 1 5 5 H 1.09002 * 114.74113 * 154.37987 * 4 3 2 6 6 C 1.54260 * 110.81159 * 288.19937 * 4 3 2 7 7 C 1.54268 * 84.60558 * 80.14817 * 6 4 3 8 8 H 1.08997 * 116.04899 * 147.38837 * 7 6 4 9 9 C 1.47362 * 111.00088 * 123.42127 * 2 1 3 10 10 N 1.48568 * 110.87990 * 20.43351 * 4 3 2 11 11 C 1.46895 * 110.99920 * 33.09479 * 10 4 3 12 12 C 1.53003 * 109.46877 * 150.65619 * 11 10 4 13 13 C 1.50705 * 109.46676 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00558 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99514 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00203 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00450 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46809 * 89.99963 * 17 15 13 19 19 H 1.48496 * 109.47251 * 210.00053 * 17 15 13 20 20 H 1.48500 * 109.46933 * 330.00200 * 17 15 13 21 21 H 1.09003 * 109.46754 * 60.00038 * 1 2 3 22 22 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47183 * 299.99879 * 1 2 3 24 24 H 1.09000 * 109.71881 * 50.96340 * 3 2 1 25 25 H 1.09003 * 109.71715 * 290.31110 * 3 2 1 26 26 H 1.09005 * 114.01460 * 194.05989 * 6 4 3 27 27 H 1.08999 * 114.01023 * 326.23430 * 6 4 3 28 28 H 1.08999 * 109.71694 * 309.03610 * 9 2 1 29 29 H 1.09000 * 109.72319 * 69.68450 * 9 2 1 30 30 H 1.09000 * 109.46543 * 270.65152 * 11 10 4 31 31 H 1.08997 * 109.47756 * 30.65341 * 11 10 4 32 32 H 1.08998 * 109.47176 * 299.99704 * 12 11 10 33 33 H 1.09001 * 109.47110 * 60.00105 * 12 11 10 34 34 H 0.96997 * 120.00643 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9971 1.3758 0.0000 4 6 3.5171 1.3072 0.2380 5 1 4.0796 2.1521 -0.1592 6 6 3.8261 0.9135 1.6972 7 6 3.5353 -0.5236 1.2177 8 1 4.1055 -1.3151 1.7040 9 6 1.9971 -0.7577 1.1483 10 7 4.0444 -0.0419 -0.0922 11 6 3.2936 -0.6433 -1.2024 12 6 4.2085 -1.5884 -1.9839 13 6 3.4379 -2.2059 -3.1224 14 1 2.3998 -1.9496 -3.2737 15 6 4.0585 -3.0981 -3.9709 16 7 3.3863 -3.6367 -4.9648 17 14 5.8539 -3.5421 -3.7088 18 1 5.9464 -4.7181 -2.8068 19 1 6.4785 -3.8702 -5.0155 20 1 6.5641 -2.3910 -3.0958 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5256 1.9507 0.7970 25 1 1.7964 1.8467 -0.9623 26 1 4.8620 1.0815 1.9921 27 1 3.1056 1.2938 2.4213 28 1 1.5256 -0.4092 2.0671 29 1 1.7964 -1.8203 1.0115 30 1 2.4460 -1.2029 -0.8066 31 1 2.9323 0.1431 -1.8650 32 1 5.0561 -1.0290 -2.3796 33 1 4.5696 -2.3750 -1.3213 34 1 3.8229 -4.2641 -5.5620 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = 63.726183 kcal Electronic energy + Delta-G solvation = -14669.059294 eV Core-core repulsion = 12410.821221 eV Total energy + Delta-G solvation = -2258.238072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.63597 -36.30940 -35.45894 -33.23331 -30.92162 -29.37257 -28.10656 -25.20150 -23.62097 -23.40841 -21.82551 -19.43210 -18.61961 -17.47253 -16.93929 -16.41113 -15.85274 -15.63672 -14.96838 -14.75160 -14.61459 -14.03213 -13.41690 -13.28304 -13.11438 -13.08850 -12.69132 -12.53544 -12.29479 -12.13550 -11.79092 -11.40943 -11.36560 -11.09336 -10.93862 -10.71446 -9.90222 -8.62652 -8.26663 -6.28388 1.33845 1.36118 1.50850 2.38489 2.75985 3.08424 3.30212 3.49174 3.67657 3.87270 4.20655 4.26701 4.35718 4.43724 4.54957 4.62080 4.65158 4.77812 4.89204 4.89912 4.97157 5.01447 5.06979 5.19680 5.25499 5.37373 5.69998 5.71336 5.80978 6.02455 6.10539 6.29182 6.43149 6.79438 7.36019 8.90189 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040282 B = 0.009355 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.936446 B = 2992.382139 C = 3377.473354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.555 5.555 3 C 0.045 3.955 4 C 0.012 3.988 5 H 0.111 0.889 6 C -0.114 4.114 7 C 0.011 3.989 8 H 0.112 0.888 9 C 0.041 3.959 10 N -0.490 5.490 11 C 0.052 3.948 12 C -0.002 4.002 13 C -0.519 4.519 14 H 0.032 0.968 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.257 1.257 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.034 0.966 32 H -0.001 1.001 33 H 0.003 0.997 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 10.144 16.349 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.280 5.280 3 C -0.084 4.084 4 C -0.098 4.098 5 H 0.129 0.871 6 C -0.151 4.151 7 C -0.099 4.099 8 H 0.130 0.870 9 C -0.088 4.088 10 N -0.211 5.211 11 C -0.076 4.076 12 C -0.040 4.040 13 C -0.558 4.558 14 H 0.050 0.950 15 C -0.192 4.192 16 N -0.594 5.594 17 Si 0.775 3.225 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.181 1.181 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.314 9.699 15.557 18.380 hybrid contribution -0.620 -0.125 0.043 0.634 sum -1.934 9.574 15.600 18.405 Atomic orbital electron populations 1.22412 0.86460 1.02377 1.01268 1.63647 1.08920 1.13829 1.41598 1.22714 0.94396 0.89299 1.01972 1.24111 0.93559 0.94646 0.97476 0.87092 1.23589 1.03216 0.93744 0.94582 1.24495 0.93289 0.99236 0.92862 0.87044 1.22943 0.94524 0.99051 0.92239 1.69440 1.46077 1.03553 1.02070 1.22803 0.95611 0.97170 0.92051 1.19515 0.95666 0.94896 0.93953 1.21438 0.97833 1.24502 1.11997 0.95004 1.25963 1.02986 0.95729 0.94568 1.70068 1.38952 1.31904 1.18456 0.85642 0.79904 0.79305 0.77647 1.19135 1.20665 1.18137 0.91545 0.91602 0.93709 0.91476 0.90898 0.88255 0.89377 0.91252 0.90937 0.88138 0.94778 0.98312 0.97879 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.56 127.69 1.22 1.76 16 2 N -0.55 -16.04 1.91 -912.09 -1.74 -17.78 16 3 C 0.04 1.13 4.73 86.55 0.41 1.54 16 4 C 0.01 0.32 5.28 44.76 0.24 0.55 16 5 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 6 C -0.11 -2.42 7.53 31.54 0.24 -2.19 16 7 C 0.01 0.30 5.51 45.37 0.25 0.55 16 8 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 9 C 0.04 1.06 4.68 87.16 0.41 1.47 16 10 N -0.49 -17.40 6.21 -884.85 -5.49 -22.89 16 11 C 0.05 2.28 3.69 86.31 0.32 2.59 16 12 C 0.00 -0.11 4.37 29.85 0.13 0.02 16 13 C -0.52 -32.22 9.66 25.60 0.25 -31.98 16 14 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 15 C 0.00 0.23 5.47 84.65 0.46 0.69 16 16 N -0.95 -62.36 13.96 21.45 0.30 -62.07 16 17 Si 0.95 47.94 27.47 68.60 1.88 49.82 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 1.33 8.03 -2.39 -0.02 1.31 16 25 H 0.07 1.96 8.01 -2.39 -0.02 1.95 16 26 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.09 1.46 7.97 -2.39 -0.02 1.44 16 28 H 0.07 1.40 8.02 -2.39 -0.02 1.38 16 29 H 0.07 2.05 7.95 -2.39 -0.02 2.03 16 30 H 0.10 4.42 4.35 -17.07 -0.07 4.35 16 31 H 0.03 1.58 6.95 -2.39 -0.02 1.56 16 32 H 0.00 -0.08 7.20 -2.39 -0.02 -0.10 16 33 H 0.00 0.15 7.57 -2.39 -0.02 0.13 16 34 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -71.43 261.97 -0.20 -71.63 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.93 Total: 6.27 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.92 Total: -24.99 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -6.93 Total: -102.73 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.88 Total: 49.82 kcal Total: -71.43 -0.20 -71.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.354 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds